Gene detail

Detailed information of FUN_028992-T1 in Colpophyllia natans

Genomic Location: contig_72:1380054...1586982
NR annotation: CAH3149908.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_028992-T1

ATGGCAGAGTCTAAATTTTTCGCCGCTGGGAGCTCGGAGAGCGAATCTTCCGCTAGTGAAGATGAGCAGCCCGTTGTTGCGAAACAAACCACTATTTCAAGGAAGTCTTTTGTCTTCagtgatgatgaagaagagacAAAGAGAGTTGTTAGAAGCCAAAAGGATAAACGGTTTGAAGAGTTAACAAACTCTATCAAACAGCTGAAGAATCACAAGAAAATCAAAGATATTTCCAAAGTCCTCACAGAATTTGAGAATCTTGGAAAAGCTTTCTCCAAAGCAAAAGCTGTAGTTGATAAAGAAGGCATTCCACAGTTCTACATTCGCTCTCTAACGGAGCTTGAAGACTTCGTCAAAGAGAACTGGGAAGATACTGAAGGCCGTAAGAAGCTTAGCAAAGTGAATGCTAGGGCTTTGGCTACTTTAAGGCAAAAGTTGAGGAAATATAACAAGGATTTCGAAGAGGACATCTTGAAATACAGGGAGAACCCAGTGGCATCTGGAGAGTCAGGTCAGGAGGAGTCAGCTTcggaagatgaagatgaaggtGACGACTTCCTTGGCGCAGaggatttttcaagaaaaaaagtcacACTGGACAAAAGCAAGCCTGCCAAGGCAACTGAAGTTGGAGGTGATAtagatgaggatgatgatgacgatgacagtATTGATTGGGATAGCAGTGATGATATGTCATCTTCAAGTGACAGTGATATTGGTGGCGAAGGAGGTCAAACGCAATTAAAACACTGGATGTTTATAAAGAAGGAGAAAGGCCCAGATGACAAAggtaaacagaaaaagaaaatcaaagagAAGAAGACAACTAAATTAAAAACCAAAGAAGGTGAAGATGATAGTGGTGGCTGGACAGAAGTAAAGGGCTCCTCCTCATCTGCTGCGGAAAAGGTCAAGCAGCTCTTTCCAAAGGACACAGAAATCACTCATGTAGTTGTATTAAAGAAGCTGCATGAGATACTCTCTGCTAGAGGAAAAAAGGGCACGGACCGCACAGACCAGATTGAATTCCTTAAGCAGTTGAGAGTTATTTCGGACAATGCCAAGTTAGGTGCTGGGATGACTGTGAAGCTTCTGTTTAATATCATCTCCTCCATCTTTGACTACAATCCGAATGTGGCAACATGTATGAAATCAGAGATGTGGCAGGAATGTTTGAAGCAGATTGATGAACTGATAAATATTCTCACTGAAAATCAAGACACAGTGACTGTTGGAGAGAACATCTCTGAAGAATCGGAGAATGTAGATCATTTGGATCAACCCTTGAAAGTACGAGGCTGTCCTCTGGTTACTGTTGAACGTATGGATGATGAATTTACTAAAATGCTTCAAGGATGTGACTGTCATTCCACTGAATATGTGACAAGACTGAGGGATGAAGAAATAGTTTGTGAACTCATTACAAAGTTACAAAGCTACCTGGAAGTAAATGGTTCAAGATCTGAGATCTGCAGAGTTTACTTGCGTCACATTGAGCATCTTTACTACAAGATTGATTCTGAGCTTGTCAGCGATGAGGAAAACAAGGAAAGTGAAGCAGATAAGGACTCAACAGAGGATGGGAAAACAGAACAACcagctgaaaaacaaaagaaagaagggCCCAGTTCATCCGAGAAGGTAGATAAGATGTGCAAGTTCATCTACTCGCGTGACACATCAGACCGTATCCGAACTAGAGCCATGCTCTGTCATGTGTATCACCATGCTCTACATGATCGCTGGTTTGAGGCTCGTGATCTGATGCTCATGTCACATTTGCAGGAGAGCATCCAACATTCTGACATTCCAACACAGATTCTCTACAACAGGACCATGGTGCAACTTGGCCTGTGTGCCTTTAGGCATGGCATGATCAAGGATGCCCATAATGCACTGCATGATGTGCAGTCAAGTGGAAGGGCTAAAGAGCTTCTTGCACAGGGTTTAATGCAACAGAGACAGTATGACAGAACCCCAGAACAAGAAAAGATTGAGAAGAGAAGACAGGTTCCATTCCACATGCACATAAACCTTGAGCTGTTGGAGTGTGTCTATCTTACTTCAGCAATGTTAATGGAAATCCCTTGGATGGCCGCCCATGCATATGACTACAGACCACGTATTTTTAGCAAGAGTTTCCACTATCAATTACGACAAAGTGAAAAGCAAACTTTAGTTGGTCCTCCAGAGAGCATGCGTGAACATGTTGTGGCGGCATCCAAAGCCATGAAGAAGGGAGACTGGAAACAATGCAAGGACTACATATTAGCTGTTAAAGTATGGAAATTGTTTCGCCAAACAGAGCAAGTACAAGAAATGTTGACAAGGAAAATTCAAGAGGAAAGCCTGAGAACATATTTGTTCACATATAACAGCGTGTATGACTCATTGAGTTTGTATACCTTGGCTGAAATGTTTGATTTGCCTGCTTCTGTGGTGCACAGCACTATCAGTAAAATGATCATCAACGAAGAACTGCAGGCCTCTTGGGATGAGCCAACTCAGACAGTTGTAATGCATCGAGGAGCTGAGCCTTCTCTCCTTCAGAGCTTGGCACTGCAATTAGCTGATAAGGTCAGCACTTTGGTAGAAAACAATGAACGTATTTATGACACAAGACATGGAGGATTTGTTCAGTTCAAGGACAGGCAAGGTCAAGGCCGCTATCGTCGACAAAATCAGCAACATTATGATCGACAAGACAGGCCAGAAAAACAGGACAGGCAAGATCGGTACAACTGGCAGGAGAGACATGGGCGCCAGTATGACCGGTCTTACCAACAGCCACAGACACAATCATCTTATTAA

Transcript

FUN_028992-T1

Protein

Uniprot

Uniprot term	Description
Q4QR58	Eukaryotic translation initiation factor 3 subunit C OS=Xenopus laevis OX=8355 GN=eif3c PE=2 SV=1
Q6P1V4	Eukaryotic translation initiation factor 3 subunit C OS=Xenopus tropicalis OX=8364 GN=eif3c PE=2 SV=1
Q6PFQ2	Eukaryotic translation initiation factor 3 subunit C OS=Danio rerio OX=7955 GN=eif3c PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05470	eIF-3c_N	Eukaryotic translation initiation factor 3 subunit 8 N-terminus	Repeat	Interproscan
PF01399	PCI	PCI domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027516	Family	Eukaryotic translation initiation factor 3 subunit C	Interproscan
IPR000717	Domain	Proteasome component (PCI) domain	Interproscan
IPR008905	Domain	Eukaryotic translation initiation factor 3 subunit C, N-terminal domain	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13937	EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0005852	Cellular Component	eukaryotic translation initiation factor 3 complex	Interproscan
GO:0006413	Biological Process	translational initiation	Interproscan
GO:0031369	Molecular Function	translation initiation factor binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03252	EIF3C; translation initiation factor 3 subunit C	-	Translation factors	ko03012	deepkoala