Gene detail

Detailed information of FUN_029179-T1 in Acropora pulchra

Genomic Location: ptg000022l:9033381...9039697
NR annotation: XP_029201633.2, LOW QUALITY PROTEIN: uncharacterized protein LOC114966064 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_029179-T1

ATGGCTTCCAATCTTCTCACTCTTTACTGCAATAAATGTAACAGTTCATTGGCAACTTCTGATATGATGATGCTGGCTACAGTTCCCCCCACACAGACACATGTTGCCATACGAAAGGACAAAGAAGACGCAGCATATGCAACGATTAGGAAAATCCCTAACGCTAACCCTAAGAAAGTTGCCTTTTGTCCTTACAGAATTCTTTGCAAACAATGCAACGATCACGTGGGTACAATCAGCATCGTTGAAGAAAATTCATTGATTTGTTTCAAGATCGAAAACGTTCATTTTCGACGAGGATACGAACAAATTAAAGGAAGGAAACTTAAAAACATAAAGGAGGAGCTAATACAGAATGGACTTGAAGTTGTTAATGTCTCACAGCTTAATGAGTTTGCAGAAACAGTAAATAACAGAAGGAAATCTTCCCAACCACTAGTCTACTGCGACACTCACCTTTCGGAAGATGACATTCTGTCCCTGACGAAAGATAGCCCACGAGAATACCAAAAGGAGCTCTTCTTGCAAGCCCTGCAAAGAAATACGCTGGTATACCTTCCCACAGGCTCAGGTAAGACCTTGATAGCAGCCATGGTACTCAACTGTATGAAGAAACTGAATCCAGACAAACTCATGGTGTTCCTCGTGGACCGTATTCCGCTGGTTTATCAACAAAGTGACTACATCAAGTACCAAGTTCCTGACTTGAGAGTGGAGATATTGGCTGGGGACATCGGGCGTTTCCCAGGGGATAAAGCGCGCTGGATGGCAACCGTCCAGGCGCTGTTAGAAAACAAAATCGACTTGCTTGTGATGACAAGTCAGATACTGTTAAACCTGATGGCTGAAGAGTGCACCGTATTGAGCATGTCTGATATATCTCTGATTGTATTCGACGAAGCGCATCACTGTCTGGGTAACCACAGCTATAATCAGATCATGAGGGATTTCTACAAGAAAACTGACGACAAGTTCAAGCCTCTTGTGTTGGCGCTGACTGCATCTCCCGCTGGCACAGATAAACTTGAAACCACAAGAGAGAACCTGGAAACTTTACTGTCAAATCTGTGCGCATGCGCACGAATGCCATTACGCTCAAGGGATTTGGAATGGTACTGTAATCAACCAGAAACGTCATACAAAGTGATTCCGTTGAACTTCAAGCAAAGCCAACTGCAATCGGATATCGAGCGGTACCTCAGTTCCATTTCAAGCGTTATTGAAGAAGAAGCAAGATATCCTAAAGCATTGGATGGTTTGAATGTGTTATCACAATTTTACCGTGGAGCTTTGCGGAAGTTAATCGAACGTTGTCATGGTGACAAGACCCGAATCAAGGGTTTAGCGATCGCTGAACATGCTATGCAAATACTCAGTGTCACTGAGGTAAACAACATTTTAGGCCATGAGTATGCAGTGGAATGCTTCGAAGAATGCATCAAACAACTTCAAACTGCAACCTCCCCCATGGACAAACTGAAGAAAACGCTCGTTGGTTCATCAGAGTCACTGGAGCTTCTAGAATCTTCGATCAGCGGAATAAGCCGAGTCTCAAACCTTTTTATTACAAGCGATAGGTATAAATGCTTAGTTGACGAACTCGAGAAGTTTATTGGTCAAGTTCAACAAGACAAAACTTCAAGAGGTATTATTTTTGTCAAGATGCGTAAAACGGCTTACAAGCTTTGTACCCGCCTACGACAAGAAAGAGAAATTTGTCAACGACTCAACCCAGCCTTCCTCGTTGGACACGGGCAAGGAAGTGATGGAATGGATTGGAAAGGAGAGCAGGAGGAAATCCTCAAAAAATTCAGATCAGGCGACGTCAAACTCCTTGTCAGCACGAGTGTGTTGGAGGAGGGCCTGGATGTACCAGCTTGCAACCAGATAATCCGGTTTGATAGCAGGCTGACTTTGCGTGCGATTGTACAGGGACGCGGGCGCGCCGCCAGACGCCCCAACAGCCAGTTTGTTATCATTTGCAGCGATGAAAAAGAAGAAACGCTTGCACGTGAAGCGGTCAGAAAAGAGGCCAACATGGAAAAAGCCATGCAAGAACTGAACGTGAACCCCTGCGATCCATTACAAGCATTGTCTTTTGGTTGTCGGATTAAAAAGCCTGATTTCAGCAGAGATCAAGTTCAGGAGTCAACCGCAGAGAGTATGGAATTCCAAACGACAGCTGAAGAACATGATATGGGAAATGACTTCAGTGAAGAAACATTGACAGTCAACGAAAGAGGAGAAAGTTTGGCTTCTGGAGGACCAACGAAAAGAAGGAAAAATTATGTTCCACGTGTTGCCATAACTGTTGATAATGTCGTCTTTGGAGATGAAAGCAAACAACTGGGTCTTTTGACCAACTACTTCGAGGACTACTTCGATGTTAAGTCTATCAAAAAAGGAGAATCTGTGGAGATGACGAAGACGACAGATGAGACGTCGGATAGAAAACGCACATCTAGATGTGTACGCCTTGAGCTGGAACCGTCTAAGCAGGGACAGTTCAACAACAAAGATAAATTCTTTGGCTATGTCGCACAGTCTTGGTGTTCTCGTCCAACTGAACTGTTGACGCAAACAAAGCAACTTTGGCTCCGTCGTGACGACATATCACAGAAACACAAGGATTACAAGCCAGTGATGGTAATTAAGCCAGACATGATGAGCCTGGGGTACTTTCGGAGTGAATCCCAATACTGCCAACACTGGCCAATTAAGAATTCCAAACTTGAAAACATTCGAATTGCTTTTCAGCATGATCTGAAAACAGTGTTGATCTGCTTCACAGTGCCAAACCCAAGAAGCCAGTTCAAGGCGGACCTTTACAAACTTCAAATCCATTACAACGAGCTTCAGGAATACATCTTGGTGAATAGACCAAGATCATCTGAAACAGACTTGTATCTGTCACTAAGACATCCACCACGCATGTTCAAAGCCAAAAGCTTTGTCAAGAAAGACCAAGATGTCAGTGATGACGATAACGACTTTGAGGACTGGTACTACGGAGAGAACGATTCCGATTCCGGCCTTGATCACGAAAACATTGACGAGTTTACGAGTGAGTCCGAAGACAGTGAGGCGTCAGACGACGGCGTTTATTCAACTGCAGATCATTCAAAGAAAGGGGAGACGCCGGACAACGAATCTCTCCTGACAAGTACAGACATCGCAAGTTTTGATGACGTGGTCAACTGGGAGAGGGTTATTGAAATAGAAGACAGTAGAGACTCATTTGGCTCATGCTGCACTTACGATTTCACTTTCAAGCCTGATGAATGGAATGATATGAAAGATGTGCTTGCCACCATTGGCAAATACGACAAGAAAGTGTTTTATGCATCTGTAACAAATTCCATCACAAGCTTACCAGAGATTTCCATCCCCAACGAACTGCCTTTCGACGTCAAATATGCCACACAGTGTGTCCTACACTCTTACCCCTTTATCAGGGGAAGAATTACTTCTACGTTCAATCATTTACTTAGTAGCAGACCCGAGCCGGTGGTGAAGTTGGCTTTAGCGAGACTCGGCTCGGCTATCGAACGAAACAGTTTCTGTGACCCAGAAGCAAAGTTTGAAAGGCTGTTAGAAGAGACAAATGTCGCTGGTGCAAGCGGAATCTCAAAACAGCTTCTCCCCAGTGAGTGTGCGATGATAAAGCGCATGGTTGTCACGCCCACACGCCTGTTATTTTTCCCGCCGGAAGTGATGTCAAAGAATCGCGTTCTCAGGCACTTCGACACTGATCAATTTCTGTGTGCCAATGTCCGTGATGAAGACTTCTCGAGGCTTTCATCGGCTGCTGGTGTCATTGACAATATTTTGGAACGCCTCCAAACCACTTTGGACAACGGTGTTATGGCAGGCGGACAACGTTTTCTTTATCTTGGTTCATCCAACAGCCAGCTTCGTAACCACGGCTTCTGGTTCGTTCGACCACGTCCTGATCCACAAGAGATTCGAGAATGGATGGGAGACTTCAGTTCAATAAGATGTGTTGGTACCTTCATGGCTCGCATAGGGCAGTGTTTTTCCACATCCATGGACGCAGTCGGTATTGATGTCAATGAAGGGACTTCGTGGGATATGGACGAAGACATTAAAACCTCTGACGGCAGTTACTGCTTTTCTGATGGTGTTGGGAGAATTTCTCACTCCTTAGCGCAACAGGTTGCTAAAACAATTGCGCTTGATTTCACTCCATCTGCCATCCAAATCCGATTTGCTGGTTTTAAAGGAGTCCTGGCATTAGATCCCACACTTTCAGGAAAGACGGCAGTATTTCGTCCGAGCATGCGTAAATTCGAGAGTCCTCACCGCCGACTAGAAGTACTACAGACCTCTCGTCCCCAGCCTGTTTTCTTGAATCACCAGCTGATAATATTACTGTCAAGCCTCGGAATCCCGGATGAAGTCTTCATAAATCTGCAGCGCAGGATGTTGGACAGATTGGCTGGTAAGAAAGACATTTCCACGTGTCGGGCGATTTAA

Transcript

FUN_029179-T1

ACCACATTTTGACGTCCTCTGTGATCTATTACTGAACAGACGCACGGCAACATGGAATCTATTTGTTTTATATAATAAAAAAATTAAAATTTACGGAAAAAAGTGTATTTTTATTTCAAATTTCGCCACTTTGACAGACACGAAAATAGCACTGACGTGATCTTATGTCTATACAAAATGAAGCGAACTGATTGGTTGCTATGCTTAGCAAAGAATTGTGATTTGTTCAAAGTCAAAATTCAAAAAATTCAAAACAAACTTGACTCGAGCGCTGTCGTCATCTATGCGTCTGTCCTCTAATAGATCATGGGCGAGAACCAATCAGAATGCGAGAATAACTTGGATTATTATATAAACATCCATACTTCACGGGCTCATTAGAACTCACAAATGACCAGCTCGCAACGTCGGTGGCTTCATAGCTCAGTTGGTAAGAGCGTCGCACCGGTATCGTGAGGTCACGGGTTCAAACCCCGTTGAAGTCCTGACTTTTTCTCTACGAAATTGCGTTCATGACTGCGATGATCATAGCTTACTTTTAGACAATTGCTTCTTATCAACCTGATCAAGTTATTTCCAGACTGGCCGATCTAGGCCATCAGCTCTGACAAATGGTAGGCGCCTTTAGGTACCCCGACCTCCGCGAGGCCTGTGCAATTTGAATTAACCAACGCATGCAAAAATAGACCGCCATCAGGAAAATCATCCAAAGGAGCTATGAATTCTCTTTACTGCACAAAGAATAGAGTCTTCTGAAGATGTGAACGCGTGTTATTGTTGTTGTTTATTTTTTAGTCTTTTTGTTTCGCTCGTTGTTTTATGAACACGTGTATCAAAAGCTCACCTCAGTCGATTCATCGTTCTTTGCTTTCTTTCAAATTGACCCCTGAAAATGCCTTGAGAACTTCAGCAAAACGTTGACCCTGGAAGATCAAAGCTTTCACTGGCCTGATTCCTTTTCAGGATTACAATTGGCGTGGCACCTCATTGGTGATCTATGAGGTGAACCATTCCTGGCGGGAAAAATACCATGGCTTCCAATCTTCTCACTCTTTACTGCAATAAATGTAACAGTTCATTGGCAACTTCTGATATGATGATGCTGGCTACAGTTCCCCCCACACAGACACATGTTGCCATACGAAAGGACAAAGAAGACGCAGCATATGCAACGATTAGGAAAATCCCTAACGCTAACCCTAAGAAAGTTGCCTTTTGTCCTTACAGAATTCTTTGCAAACAATGCAACGATCACGTGGGTACAATCAGCATCGTTGAAGAAAATTCATTGATTTGTTTCAAGATCGAAAACGTTCATTTTCGACGAGGATACGAACAAATTAAAGGAAGGAAACTTAAAAACATAAAGGAGGAGCTAATACAGAATGGACTTGAAGTTGTTAATGTCTCACAGCTTAATGAGTTTGCAGAAACAGTAAATAACAGAAGGAAATCTTCCCAACCACTAGTCTACTGCGACACTCACCTTTCGGAAGATGACATTCTGTCCCTGACGAAAGATAGCCCACGAGAATACCAAAAGGAGCTCTTCTTGCAAGCCCTGCAAAGAAATACGCTGGTATACCTTCCCACAGGCTCAGGTAAGACCTTGATAGCAGCCATGGTACTCAACTGTATGAAGAAACTGAATCCAGACAAACTCATGGTGTTCCTCGTGGACCGTATTCCGCTGGTTTATCAACAAAGTGACTACATCAAGTACCAAGTTCCTGACTTGAGAGTGGAGATATTGGCTGGGGACATCGGGCGTTTCCCAGGGGATAAAGCGCGCTGGATGGCAACCGTCCAGGCGCTGTTAGAAAACAAAATCGACTTGCTTGTGATGACAAGTCAGATACTGTTAAACCTGATGGCTGAAGAGTGCACCGTATTGAGCATGTCTGATATATCTCTGATTGTATTCGACGAAGCGCATCACTGTCTGGGTAACCACAGCTATAATCAGATCATGAGGGATTTCTACAAGAAAACTGACGACAAGTTCAAGCCTCTTGTGTTGGCGCTGACTGCATCTCCCGCTGGCACAGATAAACTTGAAACCACAAGAGAGAACCTGGAAACTTTACTGTCAAATCTGTGCGCATGCGCACGAATGCCATTACGCTCAAGGGATTTGGAATGGTACTGTAATCAACCAGAAACGTCATACAAAGTGATTCCGTTGAACTTCAAGCAAAGCCAACTGCAATCGGATATCGAGCGGTACCTCAGTTCCATTTCAAGCGTTATTGAAGAAGAAGCAAGATATCCTAAAGCATTGGATGGTTTGAATGTGTTATCACAATTTTACCGTGGAGCTTTGCGGAAGTTAATCGAACGTTGTCATGGTGACAAGACCCGAATCAAGGGTTTAGCGATCGCTGAACATGCTATGCAAATACTCAGTGTCACTGAGGTAAACAACATTTTAGGCCATGAGTATGCAGTGGAATGCTTCGAAGAATGCATCAAACAACTTCAAACTGCAACCTCCCCCATGGACAAACTGAAGAAAACGCTCGTTGGTTCATCAGAGTCACTGGAGCTTCTAGAATCTTCGATCAGCGGAATAAGCCGAGTCTCAAACCTTTTTATTACAAGCGATAGGTATAAATGCTTAGTTGACGAACTCGAGAAGTTTATTGGTCAAGTTCAACAAGACAAAACTTCAAGAGGTATTATTTTTGTCAAGATGCGTAAAACGGCTTACAAGCTTTGTACCCGCCTACGACAAGAAAGAGAAATTTGTCAACGACTCAACCCAGCCTTCCTCGTTGGACACGGGCAAGGAAGTGATGGAATGGATTGGAAAGGAGAGCAGGAGGAAATCCTCAAAAAATTCAGATCAGGCGACGTCAAACTCCTTGTCAGCACGAGTGTGTTGGAGGAGGGCCTGGATGTACCAGCTTGCAACCAGATAATCCGGTTTGATAGCAGGCTGACTTTGCGTGCGATTGTACAGGGACGCGGGCGCGCCGCCAGACGCCCCAACAGCCAGTTTGTTATCATTTGCAGCGATGAAAAAGAAGAAACGCTTGCACGTGAAGCGGTCAGAAAAGAGGCCAACATGGAAAAAGCCATGCAAGAACTGAACGTGAACCCCTGCGATCCATTACAAGCATTGTCTTTTGGTTGTCGGATTAAAAAGCCTGATTTCAGCAGAGATCAAGTTCAGGAGTCAACCGCAGAGAGTATGGAATTCCAAACGACAGCTGAAGAACATGATATGGGAAATGACTTCAGTGAAGAAACATTGACAGTCAACGAAAGAGGAGAAAGTTTGGCTTCTGGAGGACCAACGAAAAGAAGGAAAAATTATGTTCCACGTGTTGCCATAACTGTTGATAATGTCGTCTTTGGAGATGAAAGCAAACAACTGGGTCTTTTGACCAACTACTTCGAGGACTACTTCGATGTTAAGTCTATCAAAAAAGGAGAATCTGTGGAGATGACGAAGACGACAGATGAGACGTCGGATAGAAAACGCACATCTAGATGTGTACGCCTTGAGCTGGAACCGTCTAAGCAGGGACAGTTCAACAACAAAGATAAATTCTTTGGCTATGTCGCACAGTCTTGGTGTTCTCGTCCAACTGAACTGTTGACGCAAACAAAGCAACTTTGGCTCCGTCGTGACGACATATCACAGAAACACAAGGATTACAAGCCAGTGATGGTAATTAAGCCAGACATGATGAGCCTGGGGTACTTTCGGAGTGAATCCCAATACTGCCAACACTGGCCAATTAAGAATTCCAAACTTGAAAACATTCGAATTGCTTTTCAGCATGATCTGAAAACAGTGTTGATCTGCTTCACAGTGCCAAACCCAAGAAGCCAGTTCAAGGCGGACCTTTACAAACTTCAAATCCATTACAACGAGCTTCAGGAATACATCTTGGTGAATAGACCAAGATCATCTGAAACAGACTTGTATCTGTCACTAAGACATCCACCACGCATGTTCAAAGCCAAAAGCTTTGTCAAGAAAGACCAAGATGTCAGTGATGACGATAACGACTTTGAGGACTGGTACTACGGAGAGAACGATTCCGATTCCGGCCTTGATCACGAAAACATTGACGAGTTTACGAGTGAGTCCGAAGACAGTGAGGCGTCAGACGACGGCGTTTATTCAACTGCAGATCATTCAAAGAAAGGGGAGACGCCGGACAACGAATCTCTCCTGACAAGTACAGACATCGCAAGTTTTGATGACGTGGTCAACTGGGAGAGGGTTATTGAAATAGAAGACAGTAGAGACTCATTTGGCTCATGCTGCACTTACGATTTCACTTTCAAGCCTGATGAATGGAATGATATGAAAGATGTGCTTGCCACCATTGGCAAATACGACAAGAAAGTGTTTTATGCATCTGTAACAAATTCCATCACAAGCTTACCAGAGATTTCCATCCCCAACGAACTGCCTTTCGACGTCAAATATGCCACACAGTGTGTCCTACACTCTTACCCCTTTATCAGGGGAAGAATTACTTCTACGTTCAATCATTTACTTAGTAGCAGACCCGAGCCGGTGGTGAAGTTGGCTTTAGCGAGACTCGGCTCGGCTATCGAACGAAACAGTTTCTGTGACCCAGAAGCAAAGTTTGAAAGGCTGTTAGAAGAGACAAATGTCGCTGGTGCAAGCGGAATCTCAAAACAGCTTCTCCCCAGTGAGTGTGCGATGATAAAGCGCATGGTTGTCACGCCCACACGCCTGTTATTTTTCCCGCCGGAAGTGATGTCAAAGAATCGCGTTCTCAGGCACTTCGACACTGATCAATTTCTGTGTGCCAATGTCCGTGATGAAGACTTCTCGAGGCTTTCATCGGCTGCTGGTGTCATTGACAATATTTTGGAACGCCTCCAAACCACTTTGGACAACGGTGTTATGGCAGGCGGACAACGTTTTCTTTATCTTGGTTCATCCAACAGCCAGCTTCGTAACCACGGCTTCTGGTTCGTTCGACCACGTCCTGATCCACAAGAGATTCGAGAATGGATGGGAGACTTCAGTTCAATAAGATGTGTTGGTACCTTCATGGCTCGCATAGGGCAGTGTTTTTCCACATCCATGGACGCAGTCGGTATTGATGTCAATGAAGGGACTTCGTGGGATATGGACGAAGACATTAAAACCTCTGACGGCAGTTACTGCTTTTCTGATGGTGTTGGGAGAATTTCTCACTCCTTAGCGCAACAGGTTGCTAAAACAATTGCGCTTGATTTCACTCCATCTGCCATCCAAATCCGATTTGCTGGTTTTAAAGGAGTCCTGGCATTAGATCCCACACTTTCAGGAAAGACGGCAGTATTTCGTCCGAGCATGCGTAAATTCGAGAGTCCTCACCGCCGACTAGAAGTACTACAGACCTCTCGTCCCCAGCCTGTTTTCTTGAATCACCAGCTGATAATATTACTGTCAAGCCTCGGAATCCCGGATGAAGTCTTCATAAATCTGCAGCGCAGGATGTTGGACAGATTGGCTGGTAAGAAAGACATTTCCACGTGTCGGGCGATTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9LQV2	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1
Q8LHH9	Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHL2 PE=2 SV=1
O82504	RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000941 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05183 all species →	RdRP	RNA dependent RNA polymerase	Family	Interproscan
PF04851 all species →	ResIII	Type III restriction enzyme, res subunit	Family	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR007855 all species →	Family	RNA-dependent RNA polymerase, eukaryotic-type	Interproscan
IPR038557 all species →	Homologous_superfamily	RIG-I-like receptor, C-terminal domain superfamily	Interproscan
IPR006935 all species →	Domain	Helicase/UvrB, N-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23079 all species →	RNA-DEPENDENT RNA POLYMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003968 all species →	Molecular Function	RNA-dependent RNA polymerase activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0030422 all species →	Biological Process	siRNA processing	Interproscan
GO:0031380 all species →	Cellular Component	nuclear RNA-directed RNA polymerase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_029179-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.