Detailed information of FUN_029447-T2 in Siderastrea siderea

Genomic Location: contig_30:4477317...4513195
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00271
all species →
Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF18149
all species →
Helicase_PWIN-terminal helicase PWI domainDomainInterproscan
PF02889
all species →
Sec63Sec63 Brl domainFamilyInterproscan
PF00270
all species →
DEADDEAD/DEAH box helicaseDomainInterproscan
PF21188
all species →
BRR2_plugPre-mRNA-splicing helicase BRR2 plug domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036388
all species →
Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR036390
all species →
Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR014001
all species →
DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR003593
all species →
DomainAAA+ ATPase domainInterproscan
IPR001650
all species →
DomainHelicase, C-terminal domain-likeInterproscan
IPR004179
all species →
DomainSec63 domainInterproscan
IPR035892
all species →
Homologous_superfamilyC2 domain superfamilyInterproscan
IPR014756
all species →
Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR041094
all species →
DomainBrr2, N-terminal helicase PWI domainInterproscan
IPR011545
all species →
DomainDEAD/DEAH box helicase domainInterproscan
IPR050474
all species →
FamilyHelicase Hel308/SKI2Interproscan
IPR048863
all species →
DomainPre-mRNA-splicing helicase BRR2-like, plug domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47961
all species →
DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016887
all species →
Molecular FunctionATP hydrolysis activityInterproscan
GO:0003676
all species →
Molecular Functionnucleic acid bindingInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12854SNRNP200, BRR2; pre-mRNA-splicing helicase BRR2EC:5.6.2.6
Spliceosomeko03041deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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