Gene detail

Detailed information of FUN_029514-T1 in Acropora pulchra

Genomic Location: ptg000023l:2666237...2673723
NR annotation: XP_044164540.1, uncharacterized protein LOC114971660 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_029514-T1

ATGAAGAAGATTGTCAAGAACATTACGAAAAAGCTGGGCCACCGAGAAGCTCCCTTTACGCCTCGCAGCCTTCAGGAAGGATTGGACAAGCACGACAAACAGTTGAACATTGCCAGGGAAATAGGCGACCGGGGTGGAGAAGGAGATGCCTATTACAATCTCGGGAACGCTTACAACTCCCACGGCGATTTCCCAAAGGCTATCGAATGTTATGAAAAGAGTTTGAACTTATACAGGCAAGCAGGCAACCGGGATGGAGAAGGAAAAGCCTATTGCAATCTTGGGAACACTTATGACTCCCACGGCGATTTCCCAAAAGCTATCGAATGTTATGAAAAGAGTTCGAACTTATACAGGCAAGCAGGCAACCGGGATGGAGAAGGAAAAGCCTATTTCAATCTTGGGATCGCTTACAACTCCCACGGCGATTTCCCAAAAGCTATCGAATGTTATGAAAAGAGTTCGAACTTATACAGGGAAGCAGGCAACCGGGCTGGAGAAGGAGATGCCTATTGCAATCTTGGGAACGCTTACAAGTCCCACGGCGATTTCCCAAAAGCTATCGAATGTTATGAAAAGAGTTTGAACTTATACAGGCAAGCAGGCAACCGGGATGGAGAAGGAGATGCCTATTTCAATCTTGGGAACGCTTACAAGTCCCACGGCGATTTCCCAAAAGCTATCGAATGTTATGAAAAGAGTTTGAACTTATACAGGCAAGCAGGCAACCGTGATGGAGAAGGAAAAGCCTATTGCAATCTTGGGAACACTTATGACTCCCACGGCGATTTCCCAAAGGCTATCGAATGTTATGAAAAGAGTCTGAACTTATACAGACAAGCAGGCAACCAGGCTCGAGAAGGAGATGCCTCTTACAATCTTGGGAACGCTTACAAGTCCCACGGCGATTTCCCAAAAGCTATCGAATGTTTTGAAAAGAGTTTGAACTTATACAGGCAAGCAGGCAACCGGACTGGAGAAGGAAATGCCTATTGCAATCTTGGGATCGCTTACAAGTCCCACGGCGATTTCCCAAAAGCTATCGAATGTTATGAAAAGAGTTCGAACTTATACAGGGAAGCAGGCAACCGGGCTGGAGAAGGAGATGCCTATTACAGTCTTGGGGACGCTTACGAGTCCCACGACGATTTCCCAAAAGCTATCGAATGTTATGAAAAGAGTTTGAACTTATACAGGCAAGCAGGCAACCGGGATGGAGAAGGAAAAGCCTATTACAATCTTGGGGTCGCTTACAAGTCCCACGGCGATTTCCCAAAGGCTATCGAATGTTATGAAAAGAGTTTGAACTTATGCAGGCAAGCAGGCAACCGGACTGGAGAAGGAAATATCTATTGCAATCTTGGGATCGCTTACAAGTCCCACGGCGATTTTCCAAAAGCTATCGAATGTTATGAAAAGAGTTCGAACTTATACAGGGAAGCAGGCAACCGGGCTGGAGAAGGAGATGCCTATTACAATCTTGGGATCGCTTACAAGTCCCACGGCGATTTCCCAAAAGCTATCGAATGTTATGAAAAGAGTTCGAACTTATACAGGCAAGCAGGCAACCGGGATGGAGAAGGAGATGCCTATTTCAGTCTTGGGAACACTTACAAGTCCCACGGCGATTTCCCAAAGGCTATCGAATGTTATGAAAAGAGTTCTAACTTATACAGGGAAGCAGGCAACCGGGCTGGAGAAGGAGATGCCTATTACAATCTTTGGATCGCTTACAAGTCCCACGGCGATTTCCCAAAAGCTATCGAATGTTATGAAAAGAGTTTGAACATTTCCAGAGAAGCAGGCAATCGGGTTAAAGAAGAAAAGGCCTTTGTTAAACTTGGAAACGCTTACACATCCCGCAGGGATTTTCCAAAGACTATCGAGTGTTACAGAGAGAGTTTGAACATATCCAGGGAAGCAGGTTCTCGGAGTGGAGTATCTTTGCCTTTGGCCCTGGGCGATGTTTCAAAAGCTGCTGAGTATCGAGAAGGGCATTCAAAAATTGTCAAAGAAGTGGGTTGTCATACCGAGGAGGCAGCAGAGGGAGGCCCTTACAATATTCACGTGACTCCCCCTGAAATTAATTTACGTGGTCCCAGGGCCTTGGAGGCTTATAACAAGGCTCTTACAGAAGGAAAAACTCGTGTAAAAAGGATTCCAATTATGTTGATTGGACAAGAACGTTCAGGAAAAACCAGCCTGAAGAAGTCACTGCAGGGATTGCGATTCAACCCACACGAGGATAGCACCACTGGAATAGATATTGATCCGTCGGACTTCAAAGTAACCACTGAGATTTGGAAGACAGGGAAGACGGATCAAGCAGCAAACAAAAAAGGAATGGCTTCTTCTTTTGAGCATCATGTAGCCTGCCTAGTTGTTGAAAATCTTAAGGAAAAACAATTCAGTTCTGAATTGAAAAATGTCGACAAATTGAAAGATCTTGAAAGTTCCCTTACGGTCTCCACAGAGGTTCAAATTGGGAGTGAAAGCAATGAGATTTTTCAGGATCGCCAAGGGCTGTCTACAGCAATTGTTTATGATCAAGTTCGCACGTCTGCATATTCATATTCAACCACACAATCTGAAAAAGAAGAAGATGATGCAGATTCTTTAAATTCATCTGGTGCTACACACGTCGTTGGTGGCAGTAGAGTCTTTGAAACCACAGAGAGTTATCTGGCACAGACGAGATCCAGAGATAACACTGTTTCCTCGGAAAAGATACCTGAAGAGATAGAAACGTTGATTAAGAAACTGAGAGATGAAGTTGGCAAGATGGAAAGTGAGGATGACATATATTCGGTTTTGTGGGATTTCGCTGGAGAATCAGTTTATTATGAGACCCACCAACTCTTTCTGACGCCAAAGGCAATCTACCTTTTGGTTTATGACCTAAGCCGAGATCCTGAAGAAAGTGCACAGCCCGTGAAAAAGCAAGGAGTCTTCGAGAAGATTGAAGAACAGTCGTGCACGAAAACTAACCTCGACTATCTAGAGCACTGGATGACTTCAGTTTCTTCACAATCCAGTCAAACTGAAGACCACGATTTGTACTCAGCTTCGACATCCAGAGTTCTGCCAAAAACGCTTCCTCCTGTCTTCTTGGTTTGTACGCATTCCGATCAACCTTTTGGTGGAAACGATCCCTCTGAACTAGCCATTAAAGTATACGGTTCGTTGAAAACAAAATCGTATGGCGGACAGCTGTTCCATGCTGTGTTTAATGTGGATAATACTAAATCAGGCCTGCAAACGGAATGTCCAGAAGTGAAACGCTTGCGAGAAAGTATATTAGCTGTTGCCATGGAGCTACCACTAACGAAAGAGAGTATTCCGATCAAATGGTTGAAGTATGAAGAAGCGCTCCAGGTCGTACTGGATGAGGGCCATAAGTGGATTACAATTGAGCACGCCAAACGGATCGCCTCTGAAGTCTGCGAAATTCATGACCATCAAGAGTTTGTAACTTTGCTTGACTTTTTGCACGATCAGAGAATTTTAATACATTTTGGTGACACTGTTGATCTGAACAAATTAGTTGTTTTGGATCCTCAGTGGTTGATCGATGTATTTAAGGCAGTAATAACTGTTAAGCGTTATGACCAGCAAGAACGGGAATTGAACGATTCGTGGCTTAGGCTTGAAAGAGAAGGAATCCTGGAAGAAAAACTCCTCAAGCATGCGTGGGGTTCATTGGTCGAGGAACTTTACACCTTTGAAAGCCTCATCGCAATCATGGAGAAGTTCAGCTTGTTGTGCTGTTGGTCTTCATCTGACGAGCCATGTGGTAAGGAGTATCTGGTGCCGTCCATGTTAAGATGGTATCCACTACAGGAGATTACCAAGTTGATTACCTCGGCAAGACTCCCCTCTCTTTTCGTCAAGTTTGGACCTGGTGAAATTCCATCAAACCTGTTTCCACGACTTGTGCTTCAATTCCTTCAGTGGGGCAGAAATGAATTTTGGAGCACAGCGAGTCCTCAGCTGTATAAGAATTTTGCCAGGTTTTACACCGCTGAAGACGAAAACTGTTCAGTGGTACTCTTATGCCATTCCTCCTTGATTGAAGTCGTTGTTCATGAAGGGAATGTTCATTCACGGAAGGACGACTTGCCCCGAGATAAACGTGATTCATTTGAAGTGCACTGTGCCCGTGAAGTCTTCAGACAGCTCGTGTTCTTGCTTGAGTGCTTGCGTAAAGAGTTCTGTTGGTTGAAGAGAATGAAATATAAAGTTGGGGTGATTTGTCCTGTTTGTTGCCATAAAAGGCTTGTCAGTTATTGCTCTACTCATCACAAACAAGACTGTGAGCGGGAAGAATGTCTTCATTTCATATCTGAATCGGAGCTGCGCAATGCAAATCAGAGTATCACTTGCACCAGGTCGGCAGTTGCAGTAAATAACAAAGTATACATCAAGGATTTTACAGCATGGTTTGTCAGCCCAAGCGGTGAGACAAGAACCGGCGCCGTTGGTGGAAGAATCGTATGCAGTCGAAGAGGTCCATTTTTTCCTGGGAAACTTGACATTTGCGATATCCCGGATGAGAAGACGAGAGACTTCACAATTACTTTGGCTGAGAATGAAGACAAGTCACTTGCTCTTCCTTGCAATGTCGTTGAATCACTAGTGTCGCCGTCATGTGATCCAAAAGAAATTGTCGTTAAACTGAAAGAAAACCTAAACTTGGAACAAGCGGATTTGGAGAAACCCAGCGCGGAAACAACGAGAATGATCCGTTGTCTTACAGCAACAGCTAAGGATACAAACCGGATTGATGTTGTTAAACACCTGAGAGAAATCATGCCAGCAGGGACAACTGGTCCATTGTTGCCTGGGAAACTTGATATTTGTGATATCCCAGTTAAGAATAGAAGACATCTTACAATAGATTTGACCGTCGGAGGCCGGTGGAAAGATGTTGCAGACAGACTGGGCTTAAGGGGAAGTGAGATCCAATTCCTTGATGAGAGATATCCGAATCCCAGTGAAGCTACATTGGACTTTGTGGCTCATTTTTATGGCATGAATGTGGATGGGCTGTACGATGTGTTAACTGAGTGTGGGATGCCTGTGCTAGCTGATATTTTGTGA

Transcript

FUN_029514-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q55E58	Probable serine/threonine-protein kinase pats1 OS=Dictyostelium discoideum OX=44689 GN=pats1 PE=3 SV=1
Q5S007	Leucine-rich repeat serine/threonine-protein kinase 2 OS=Homo sapiens OX=9606 GN=LRRK2 PE=1 SV=2
Q5S006	Leucine-rich repeat serine/threonine-protein kinase 2 OS=Mus musculus OX=10090 GN=Lrrk2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000151 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00515 all species →	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF07719 all species →	TPR_2	Tetratricopeptide repeat	Repeat	Interproscan
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR052386 all species →	Family	G-protein-signaling modulator	Interproscan
IPR006597 all species →	Repeat	Sel1-like repeat	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013105 all species →	Repeat	Tetratricopeptide repeat 2	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45954 all species →	LD33695P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000132 all species →	Biological Process	establishment of mitotic spindle orientation	Interproscan
GO:0001965 all species →	Molecular Function	G-protein alpha-subunit binding	Interproscan
GO:0005092 all species →	Molecular Function	GDP-dissociation inhibitor activity	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_029514-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.