Detailed information of FUN_029538-T1 in Siderastrea siderea

Genomic Location: contig_30:5603023...5604208
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04819
all species →		DUF716Family of unknown function (DUF716) FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR042127
all species →		FamilyTransmembrane protein 45Interproscan
IPR006904
all species →		FamilyProtein of unknown function DUF716Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16007
all species →		EPIDIDYMAL MEMBRANE PROTEIN E9-RELATEDInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_029538-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_029538-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_029538-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
38TPM > 0
7Conditions
241.9Max TPM
8.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 8 7.65 102.37
holobiont · low.pH Control.temp 20 9 15.65 241.90
holobiont · control.pH_high.temp 20 5 3.01 20.03
holobiont · control.pH Control.temp 19 10 11.16 63.04
Whole organism 4 4 0.18 0.33
unannotated 1 1 0.12 0.12
live coral tissue/skeleton 1 1 2.05 2.05

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP