Gene detail

Detailed information of FUN_029618-T1 in Siderastrea siderea

Genomic Location: contig_30:6511814...6522239
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_029618-T1

ATGAACGATAACACTCTTCATCGCGGGGGTTCCACTCTACCACCACATAGCAACCCTGCTCAACTTGATGATGGAAGAAGAAGGGCCATTTCAGATCCACCGCATTTATCAGTTCCTGAACCTTTTCAATCCATTCCTGCACAAGAACTACTTAAGGACAACTGTGGATATTGTGGATGGATCAGAAAAGAGGGTGGCAGCATTAAAACATGGCATGATAGATACATCATCTTACACAAAGGCTGCCTGTATTATTACTATAAACCAGAAGCAGCGACAACAGCTGGAAAGTTTTCTCTGAGCGGATACAGGCTGTCCCCTGCTCCAGAGAAGAGTTCTAAATACCAGTGGACATTTAAGCTAGTTCATATACAGCCAGAAAAAAGGACGTATTATTTTGCTGCATATTCTGAAAGAGAAATGAATGAATGGATGGAGAATATAACTCAGGAAATGGAAGAATATTGTGGAACTGGAAAACAAACAGCTGAAACAACTGAAGCTGGAGATGGAGCTGAGTATTGTTATCCAGAAGTAGAACCAAGATTTGATCCAGAAGAATTTGCTGTGTTGTTTGGTAGACCGTCACCTAGTCTACCTAGAAAACCAACAACATCAGAACCATTTTACTGCCCACCCCCAGAGATGGAGCCTAGTGATGTGATGAGCAGTTCACCACAGCCTCCCAGACCTGCGTCTCGTCCGCTGAAGCAAGGGTCTGAATTTCCCAAGGGGTGTAACCTCCCTATACCCCCGTTCGGATCTTCTTTGAGACCAATGAAGCCTCCTCCAGGTTCTAGCCCAGTTTTTCCACGTAATACAAAAGAGAGCCCTGCAGTACCGTCAAGGTCAGGAAAGCCAGCAAATGGACTTAAACCTTCATCTCTGCCTAAACCTCCAGGATCCAGCCCTGTCTTTCCTCATCGCGCAAAAGGGACTCCAGCAGTACCTTCAAGGCCATTGAAGCCTGTAGCTGAACCTGCACCTTCAACTCCACAGAGACCTAAACCCAAACCATTGCCACGGCCACCTGTAACAAAGCATTCCACGGAACCCATTTTGAAGTATGAAAAACATTCAGAAGGTCAAGATGATGATGAAGTCAGTGAGGGCTATTTGGATATAGTTCCTGAGACAACGCCGGAAGATGTATTTGATGAAGGGAGAAAGAGCACCCTCTCAAGGGGGTACCCTGATGGTAATAGCTTTCGGCAGCGCCACACTGAGAATGTTGTACTTCCTCCTACTGCTTTGAGACTTGACATTGATAAGACTGCAGTGACCAAGCTGCTGGAGTATAAACAAGGAGTTTACATTGTACGGAAAAGTGAAAACGCACAGTCACAGCGGGCTTTGGCTGTGTGGACGGGAGATCGAGTAAGACATTACATGATATTCTATGACAAGAAAACAGGTTATGCTCTTGATCCTGATGGAGAACATTTTGACAAACTTGAAGACTTGTTATGGCATTACCGTGAAGTTAATCTGCCCAAATGTGACGTCAAACTCATAAGACCATATAAATAGCTTAAGCACTGGGTTTAGCCTGCAGGCGGGCTCACCTTGTTGGCCTTTTTATAAGCTGTAGAAGAAGATGTGGGCAGGCTGGCTTAGTTCGCCGGCTCGTATATAATTGTTTTGCCAGTAAGAGACTCGCAAAAGCCCAGCCAAGTGGACCCGGCCTGCAGGCTAAGCAGGGTTGTAAAAGAAGAGATTCTTTATACTGCTTAGTGTGCAATCATAGTAATGTTAGGACTGCGAAATTTAATTGGAGCAAAATTTAAAACCCTGAGTGAATTGTACAGTAAGACGCCAAGTCCCATTGTAGTTTATTCGTACACATGTATGATGCAATTTTCAAGCTGTCCCAAAATAAGGTTTCTGAACGTTTCCGTGGCTAACAAGAAGGGTGTCTTTCTTAGTTTTGTCGGATAGAACTATTCAATTGAATTTTTTAAGATCAAGCAGCTGTATTTAAACAATTATGTTCAGAACAAATTGCCTTGAGCATTTAAAATTACTATTGATACCATTTAAAGTTAATATATCCAGCTAGCAGCGTCctcttcgatcttcctagaaaGGAAGACCAAAGAGGACGCTGCTAAAAGGGTAAGGTaaatattaaattattatttttattttttgtatcatatattgtatttttttaccttttagctagcctgttccaggcccTCCGATAGTAGGGACGGCAGCCCCGCACTCTTTTTCTCAATTCGAGCTTTCCCcgctatctcggagcctggaacaggcatGCTGGACCTCCAACATTGTGTTCTTTATGACAGTTATTGTGACAGTAATAATTAACTCAGTAATATAATGAACAGTAATAATTAACTTGATGAGTGAAGGACCAACACTGCGTTATTTACCAATTAACCACAGTTTCTGAAATCACAGTGAGAGACTTTCGGTCATCATTCGTACGTTCCaccagcagtttttttttaatatgataaTAATATTGTCATAACAATGACAGTGGCATGGTGCAGGTTTTGTCAAACCTTTAAGTCCCATTAGTGATCAGcatctaaattctccttacagtatcattacctgatcaaacatacaggtcgtgagaataaagggaatgatcaccaaagatttCTTGATGTTTGGTCAAATTCTCCGAACTAGTACcatgagaaatgtatggagaacattGCGGAGAATGTACATGCTGATACTGGAGCTtaattaaagggttaagttttCTGTCTCATACCGTCTATAGATTACGTTCGGTGACAGAATACAAAATAAAGAGCTAAGTTTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR035848 all species →	Family	SH3 domain-binding protein 2	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15126 all species →	SH3-BINDING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0017124 all species →	Molecular Function	SH3 domain binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07984	SH3BP2; SH3-domain binding protein 2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.