Detailed information of FUN_029654-T1 in Acropora pulchra

Genomic Location: ptg000023l:4147728...4151190
NR annotation: XP_015779083.1, PREDICTED: E3 ubiquitin-protein ligase TRIM71-like isoform X1 [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q13263Transcription intermediary factor 1-beta OS=Homo sapiens OX=9606 GN=TRIM28 PE=1 SV=5
Q62318Transcription intermediary factor 1-beta OS=Mus musculus OX=10090 GN=Trim28 PE=1 SV=3
O08629Transcription intermediary factor 1-beta OS=Rattus norvegicus OX=10116 GN=Trim28 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000225 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17170
all species →		DUF51286-bladed beta-propellerRepeatInterproscan
PF00643
all species →		zf-B_boxB-box zinc fingerDomainInterproscan
PF00630
all species →		FilaminFilamin/ABP280 repeatDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001258
all species →		RepeatNHL repeatInterproscan
IPR000315
all species →		DomainB-box-type zinc fingerInterproscan
IPR011042
all species →		Homologous_superfamilySix-bladed beta-propeller, TolB-likeInterproscan
IPR017868
all species →		RepeatFilamin/ABP280 repeat-likeInterproscan
IPR001298
all species →		RepeatFilamin/ABP280 repeatInterproscan
IPR014756
all species →		Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR047153
all species →		FamilyTRIM45/56/19Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR25462
all species →		BONUS, ISOFORM C-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_029654-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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