Gene detail

Detailed information of FUN_029700-T1 in Siderastrea siderea

Genomic Location: contig_30:7469929...7501093
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_029700-T1

ATGCAGACTCTGGTCTATGAAAACTACAACAAGTTCATCAGTGCTACTGACACCATAAGGAAGATGAAACATGATTTCAAGAAAATGGAGGAGGAGATGGACAAGCTGCGAGAAAACATGTCAACGATCACTGAGTTTAGTGAGAAAATAACTGGCACTTTGCAGGGAAAGAGGCAACAGATTACTAAATTATCAGGTGTTCATACTCTCCTAAAAAAGtTGCAATTTCTTTTTGAGCTTCCTTCAAGACTGAACAAGTGTGTTGAAATGAAGCAATATGGACTAGCAGTCAGGTATTATACAAAAGCCAGAGATGTCCTTCACCATTACAGCCACATGCCATCATTTCATGGTATTCACCAAGACTGTGACGAGATTGTGAAACAGCTCAGAGTTCAACTAAGGGAACAACTCAGAAATCCAAAGTCCACACCCAAACAGTTAGCAGAGTGTGTTGATCTTCTGCTTCAACTCAGGGAACCTGCAGATGAACTGTGTGATGAATTCCTTACACATGCTCAAGAGAGACTGGATGAGAATTTGAAAACACTCAAAGACCAGGTGGACTTAAAATTGTCAGGAGATATGACAGTTTATGCACAGGAGGGAGAAGATAAAGAGGGGAATGAGGAGAAAAAATCACCAAGACCAATGGACTTGTTGGAGTTTATTGACTGTGGCTGCAATGGCTTTCTCAGCACAATTTGCTTGGTGATCGCATCCTACAAGGAACAGTTTGTTCAAAGACAGATGGCTGAACATGGCCAAGATCAGCAAGAGCTGGACAAGATAGTCACTGACAAACTGTCTAGTTTTATTCTGTCACTGATGAGGGAATACTTCAAACTCACAGAAGCCAGGATTGAACTGGAGTCTGATACAGGAGACAATGTTCTTTTAGTACGAGCACTGGATCGCTTTCATCGCAGACTTCAAGCTGTACAGAAACTTCTCCCTGAAATAGGAGTAGGACGTTTGGGGGCCAACATTGTAGCCCGGTCTGCACATAACAGAGTAAAAGCTTATGCTCAGAATCTCAGACAACACTTCGCAGTTTGTTTAACAGATATCAGACAGACCCTGGCAACTCCATTACCCACCTCTGGCAGCGAGAAGCCACCCTCTCTCTCTGATCTGTTGTCTACCATGAACAATTCCCTCACCAACCAGCTGAAGTTGGTTTTAAACAGCCTCAAGACCTTCATTGGTAATGACATCACATTTGCCGTCAAACCATACTTCCGGGGACCGTTCTGTTCTGATGACGTCAGAGAGGGACTAGCAGTTGAGTTTATACGTCATGTACTACAGTCTGCCAAGGAGTTCTGTGAGGTAGCAACAGCTCCACCAGCTCTCATTCTGCTGTTATCAAGATTATGTCTTGATTTCCAAGAGTCAACCATCTCGTATGTGTTAAGTCTCACTGATGAACAATTTCCAGTCGACGAGGAGCTTGGACGAGGAAGCTTAACGACTTCAGTGTCAGATCTTGCCACCGAGGCTCGTCACATTGCGCAGGGTTTATTAAATCATTACGTGAGGATGCAAGGACTGACGATTTCCCAGATGATCCGCAAGAGCGTAGAGACACGTGACTGGATGAACACGATTGAGCCTCGGAATGTGCGCGCTGTTATGAAGCGAATCGTGGAAGATGTGACAGCCATTGATACACAAGTGGGTCAACTGTACGAGGAGGGAGTGCGCAAAGCTCACAGCTCAGATTCCAGTAAATTCACGTACACATACCCATCCAAACCAAGCCGATCACAGTGGAGTTACACCGCCAGCACGGCATTTGATTCCAGTCTTCTTAGTAACATCCAAAAGTTATTCTCGGAACGAATTGAGATCTTCAGCTCAGTGGAATTCTCCAAAGTGTCTGTGTTAACCGGGATTGTCAAAATAGGACTAAAGactCTCCTGGAGTGCGTAAGACTTCGAACATTTGGAAAATACGGCCTACAACAGATTCAAGTGGACACTCATTACCTACAGATGTACTTGTGGAGATTTGTTTCTGATGAGAACCTGGTGCACTTTATGCTGGAAGAGGTTGTCAACAGCACTGTGAACAGATGTATATCAACAGAACTCATGGAGCCTAGTGTGATTGAAGTGATCTGTGAACGAGGCTGA

Transcript

FUN_029700-T1

ACAAAGAAGCAGACGTTGCCAAACGTATGAAATTGTTCTATGCATATATGGTAATGATAGGGCTGAACTTATTAGCGATAAATCAGCATCAGATTAGGGTATCAGCCAGTGGAAAATTGCCCATTTCACATAATTTGAGTTACTATAAACGTATTGGGTAAAATTATATTCAAATTGAGGAACTGATAGTCTCAAATTGGGTATGTTTCACCTGCTAGTCTGAAAGAGGGTATAGATTTGTGCCATTTAGGTTTAAAATGACCTGAAAGGGAGAGGgggttaaccctatttagcctgggagGGGAGGCACATTGTGCCTGCACTGACTTTaacaaattataacttttaaacggccagacaaataatcaccaaatctcttgacttttcctaaaaattatcagagaaaattttcccgtgtcaatgacgtgtctatgatgattgacgtttccatagcaaccatcTACTATATTGACTatattctgtcttttttcagtttttttcagttttttcccctccgtttgtaagaagaagataatttttttacttttgtgtgcttgttttgattaagtatgttacTTAGaccaaaatcatatattttttggtgacgtcattgtcagctgtatgactgccagcttgggattcaagatggtggcctcaaattcaaaatggcaggttTGTGATGTTATTGTGACATCACGACAcatcataagcccaatctgttaagctaatgaggTGCTAAAaatgtgccaagtttcatcgcaagagttTTAACACTTTTCTAAATCTGTAAGGGGGCAATttgtgccccctccccccccccccaggctcagaaactcaaaaaaagcccaggcagagtAGGGTTAAGGGTCAGTTCTGAAATTAAGTAGGAAAAATGAcatgttttggtctgaaaaacagGCTGTATGGCTCCACCtaaagttttaaggtgttagcCCCCTCCCCCCGACCTCCCTCAGTAGGTATGTGGCCATATGGTCAGCTGCTTATGCCAAGTTGCGTTTGTTGTCATGCATGTAACACACACTTGAAATACATTATTAATGCAAGGAAATTGAACCTTTGTTCGCAGAAATCAGAGCTTTGGATAGTGAGATGCAGACTCTGGTCTATGAAAACTACAACAAGTTCATCAGTGCTACTGACACCATAAGGAAGATGAAACATGATTTCAAGAAAATGGAGGAGGAGATGGACAAGCTGCGAGAAAACATGTCAACGATCACTGAGTTTAGTGAGAAAATAACTGGCACTTTGCAGGGAAAGAGGCAACAGATTACTAAATTATCAGGTGTTCATACTCTCCTAAAAAAGtTGCAATTTCTTTTTGAGCTTCCTTCAAGACTGAACAAGTGTGTTGAAATGAAGCAATATGGACTAGCAGTCAGGTATTATACAAAAGCCAGAGATGTCCTTCACCATTACAGCCACATGCCATCATTTCATGGTATTCACCAAGACTGTGACGAGATTGTGAAACAGCTCAGAGTTCAACTAAGGGAACAACTCAGAAATCCAAAGTCCACACCCAAACAGTTAGCAGAGTGTGTTGATCTTCTGCTTCAACTCAGGGAACCTGCAGATGAACTGTGTGATGAATTCCTTACACATGCTCAAGAGAGACTGGATGAGAATTTGAAAACACTCAAAGACCAGGTGGACTTAAAATTGTCAGGAGATATGACAGTTTATGCACAGGAGGGAGAAGATAAAGAGGGGAATGAGGAGAAAAAATCACCAAGACCAATGGACTTGTTGGAGTTTATTGACTGTGGCTGCAATGGCTTTCTCAGCACAATTTGCTTGGTGATCGCATCCTACAAGGAACAGTTTGTTCAAAGACAGATGGCTGAACATGGCCAAGATCAGCAAGAGCTGGACAAGATAGTCACTGACAAACTGTCTAGTTTTATTCTGTCACTGATGAGGGAATACTTCAAACTCACAGAAGCCAGGATTGAACTGGAGTCTGATACAGGAGACAATGTTCTTTTAGTACGAGCACTGGATCGCTTTCATCGCAGACTTCAAGCTGTACAGAAACTTCTCCCTGAAATAGGAGTAGGACGTTTGGGGGCCAACATTGTAGCCCGGTCTGCACATAACAGAGTAAAAGCTTATGCTCAGAATCTCAGACAACACTTCGCAGTTTGTTTAACAGATATCAGACAGACCCTGGCAACTCCATTACCCACCTCTGGCAGCGAGAAGCCACCCTCTCTCTCTGATCTGTTGTCTACCATGAACAATTCCCTCACCAACCAGCTGAAGTTGGTTTTAAACAGCCTCAAGACCTTCATTGGTAATGACATCACATTTGCCGTCAAACCATACTTCCGGGGACCGTTCTGTTCTGATGACGTCAGAGAGGGACTAGCAGTTGAGTTTATACGTCATGTACTACAGTCTGCCAAGGAGTTCTGTGAGGTAGCAACAGCTCCACCAGCTCTCATTCTGCTGTTATCAAGATTATGTCTTGATTTCCAAGAGTCAACCATCTCGTATGTGTTAAGTCTCACTGATGAACAATTTCCAGTCGACGAGGAGCTTGGACGAGGAAGCTTAACGACTTCAGTGTCAGATCTTGCCACCGAGGCTCGTCACATTGCGCAGGGTTTATTAAATCATTACGTGAGGATGCAAGGACTGACGATTTCCCAGATGATCCGCAAGAGCGTAGAGACACGTGACTGGATGAACACGATTGAGCCTCGGAATGTGCGCGCTGTTATGAAGCGAATCGTGGAAGATGTGACAGCCATTGATACACAAGTGGGTCAACTGTACGAGGAGGGAGTGCGCAAAGCTCACAGCTCAGATTCCAGTAAATTCACGTACACATACCCATCCAAACCAAGCCGATCACAGTGGAGTTACACCGCCAGCACGGCATTTGATTCCAGTCTTCTTAGTAACATCCAAAAGTTATTCTCGGAACGAATTGAGATCTTCAGCTCAGTGGAATTCTCCAAAGTGTCTGTGTTAACCGGGATTGTCAAAATAGGACTAAAGactCTCCTGGAGTGCGTAAGACTTCGAACATTTGGAAAATACGGCCTACAACAGATTCAAGTGGACACTCATTACCTACAGATGTACTTGTGGAGATTTGTTTCTGATGAGAACCTGGTGCACTTTATGCTGGAAGAGGTTGTCAACAGCACTGTGAACAGATGTATATCAACAGAACTCATGGAGCCTAGTGTGATTGAAGTGATCTGTGAACGAGGCTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15469 all species →	Sec5	Exocyst complex component Sec5	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016159 all species →	Homologous_superfamily	Cullin repeat-like-containing domain superfamily	Interproscan
IPR014812 all species →	Family	Vacuolar protein sorting-associated protein 51	Interproscan
IPR039481 all species →	Domain	Exocyst complex component EXOC2/Sec5, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15954 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000938 all species →	Cellular Component	GARP complex	Interproscan
GO:0007030 all species →	Biological Process	Golgi organization	Interproscan
GO:0007041 all species →	Biological Process	lysosomal transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0032456 all species →	Biological Process	endocytic recycling	Interproscan
GO:0042147 all species →	Biological Process	retrograde transport, endosome to Golgi	Interproscan
GO:0048193 all species →	Biological Process	Golgi vesicle transport	Interproscan
GO:1990745 all species →	Cellular Component	EARP complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20296	ANG2, VPS51; vacuolar protein sorting-associated protein 51	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.