Detailed information of FUN_029849-T3 in Siderastrea siderea

Genomic Location: contig_31:504763...510952
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00044
all species →		Gp_dh_NGlyceraldehyde 3-phosphate dehydrogenase, NAD binding domainDomainInterproscan
PF02800
all species →		Gp_dh_CGlyceraldehyde 3-phosphate dehydrogenase, C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR020828
all species →		DomainGlyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domainInterproscan
IPR020830
all species →		Active_siteGlyceraldehyde 3-phosphate dehydrogenase, active siteInterproscan
IPR036291
all species →		Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR020831
all species →		FamilyGlyceraldehyde/Erythrose phosphate dehydrogenase familyInterproscan
IPR020829
all species →		DomainGlyceraldehyde 3-phosphate dehydrogenase, catalytic domainInterproscan
IPR006424
all species →		FamilyGlyceraldehyde-3-phosphate dehydrogenase, type IInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10836
all species →		GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0051287
all species →		Molecular FunctionNAD bindingInterproscan
GO:0016620
all species →		Molecular Functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptorInterproscan
GO:0004365
all species →		Molecular Functionglyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activityInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0006096
all species →		Biological Processglycolytic processInterproscan
GO:0006006
all species →		Biological Processglucose metabolic processInterproscan
GO:0050661
all species →		Molecular FunctionNADP bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K00134GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)EC:1.2.1.12
Exosomeko04147deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_029849-T3 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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