Gene detail

Detailed information of FUN_029855-T2 in Dendrogyra cylindrus

Genomic Location: contig_76:1184952...1194978
NR annotation: XP_027049189.1, EARP-interacting protein homolog [Pocillopora damicornis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_029855-T2

TGGGGAGACTTCCGGATAATCTGGGAGAGTACATGTATGAAATTGCTGAACACTCAGTCACTCACCACCCCCCTGCCAACTGCCAATGAAACTATTATGCTAGAAACATGACACTTGTGTTGTTTATCAACCAAGATGATGATGCAGATGATGTAGTGAAAGTGACAATATAcaatgttgttgttattgttgttgacaATGAATATGAAGACAACAACGATTATaatgatgatggtggtggtgattatggatgttgataatttttttctattttttttattcaggcTCGAGCTCTAGTCCCTCAACATGCAGAGACAGACGTCATAAGATTTATTGTTGGCACTCAGTcactaaaatttgaaaaccaggTTCATCTGATAGACTTTGATGACGAAAGCAATGTTATAAATAAAAATGTGTTTATGCATTCTGCTGGAGAAATTTGGTCCATAAACACAAGTCCAACTGACAAAACTATATTGGCAACATGTTATAACAAAGTGTCTGAGTCCAAGACTGAAATACAAGGAGCTCTGTGGAGAATTCCCCCAGTGGATGACAATGAACCCCCTTTAGACTCCCCTGGGATTTCCCCTGGAAGTGGACATTCTCGATCATTACAGCTTATCTGTCACCTTGATAACAAGCATGAAAATATGAGAAGTGTGTTGTGGAACCCATCTGGTGATGGAAGTCAAGTAGTATCTGTCTGTGAACAACATCTTGAGTTATGGGATCTTGACAGAACTGCTTCAACTGCAGAGTCCATTGACTCAGCTCGGCTAGAGGGCAAAGGTCAACCCAAGTTCACCACAGGTCGGTGGAACCCTCATCACAGTGGTTCCCAGATTGCCACAGCAAATGACACAACCATAAGAGGATGGGATGTGAGGACAATGAGGCCTGTGTACACAATCGAGAACGCTCATAACCAACTGGTACGTGACCTGGACTTTAATCCAAACAAGCAGTATTTACTGGTCAGCTGTGGTGATGATTGTAAGATGCGCTTCTGGGACACAAGGAATACTGCCGATCCCCTAATGGTGTTGCAAGATCACTCGCACTGGGTGTGGAGTGTGCGATATAATCATTTCCATGATCAACTTCTGTTGACATCAAGCAGCGACAGCCGGGTTATTCTAAATAACATCGTGTCTTTATCATCTGAACCGTTTGGTCATCTGGACGAGGAAGACGAAGACGATGGGATGCAAGACAAGGGGTCCCGGGAACCCACAAAAGATGGCGTCATAGCAACGTTTGACGAACATGAAGACAGTGTGTATGCTGTGGAGTGGTCTACCGCTGACCCGTGGGTGTTTGCATCGCTGTCGTACGATGGACGATTGGTGATAAATAGAGTCCCCAGAGCAGAAAAGTACAAGATACTTCTATAGCCGATCGATACATTGGAATAACGGTGGAATGGACCACTGCAGTGCAAAATGATGAACTGAATGGCTTCATCGGCAGGACAAAGTTATCTGAGAATCAAAATCATGGCTTCTAGCAAGTGGAAGTGTGGGTGTGGAAGGAGGGACTGAAAAATGAGATTCTGTATCATTTGTCATTATCGATGCTCACCTCTCTGTGCCATGaatactgtaaatatttttaaactcgGAAACGGCGTAGAACGGAAGCTGTTTTGTAAAAGAATTGACAAATCAGTGGTCACTAAAATATAATGAAATCAGAGCGAAAACGAATTTTACCTAAAAACGAAAGTCAAAATGGAACGAGATGAACAAGTGCCACGGTAagacaaaataaaatcaaaaaataaaaaaaatcgactaaaaccaCGATATTTGGAGGGGAAGCCACATCAGCCCAAGTTGGTTTTCATGCCGGTCCTCTATGGaattggaattttgttttttcaggagggaggaaaactggacAACACtgacggaacaaaacaaactcaacccggaatcgaacccaggccacattggtgggaggcgagcgctgtCACCCATGCTCCTTAACTCAGTAGTTTAGCCGGTTGCTCCTGTTGTTGCCAGGGTAACTCATGCTTTATCGTAATTATCATACGTGACTCGAGGCCAGGTTTTCAATGCTGGAGAGGTCTGTATGTTAACCCCGTACACTTGACTAAaatgattaagacggaatccgccaggacttcgagtagttgttggacaaaattatgtaccaaaattatttacaccttattgcaagc

Protein

Uniprot

Gene family

Uniprot term	Description
Q5XJP1	EARP-interacting protein homolog OS=Danio rerio OX=7955 GN=eipr1 PE=2 SV=1
Q6DUZ9	EARP-interacting protein homolog OS=Gekko japonicus OX=146911 GN=eipr1 PE=2 SV=1
Q5M8I4	EARP-interacting protein homolog OS=Xenopus tropicalis OX=8364 GN=eipr1 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR040323	Family	EARP and GARP complex-interacting protein 1	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14205	WD-REPEAT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23289	EIPR1, TSSC1; EARP and GARP complex-interacting protein 1	-	Membrane trafficking	ko04131	deepkoala