Detailed information of FUN_029940-T1 in Siderastrea siderea

Genomic Location: contig_31:1401417...1426401
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02759
all species →		RUNRUN domainFamilyInterproscan
PF13901
all species →		RH_domRubicon Homology DomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR004012
all species →		DomainRUN domainInterproscan
IPR037213
all species →		Homologous_superfamilyRUN domain superfamilyInterproscan
IPR025258
all species →		DomainRubicon Homology DomainInterproscan
IPR051366
all species →		FamilyDifferentially Expressed in FDCP 8 HomologInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12326
all species →		PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEINInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_029940-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K23282PLEKHM1; pleckstrin homology domain-containing family M member 1-Domain-containing proteins not elsewhere classifiedko04990deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_029940-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
75TPM > 0
7Conditions
564.2Max TPM
145.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 16 112.34 231.49
holobiont · low.pH Control.temp 20 18 178.22 555.42
holobiont · control.pH_high.temp 20 18 190.52 564.20
holobiont · control.pH Control.temp 19 17 135.27 556.13
Whole organism 4 4 26.30 33.04
unannotated 1 1 23.49 23.49
live coral tissue/skeleton 1 1 23.99 23.99

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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