Detailed information of FUN_029957-T1 in Siderastrea siderea

Genomic Location: contig_31:1583250...1598799
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15295
all species →		CCDC50_NCoiled-coil domain-containing protein 50 N-terminusCoiled-coilInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039303
all species →		FamilyCoiled-coil domain-containing protein 50Interproscan
IPR029311
all species →		DomainCoiled-coil domain-containing protein 50, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22115
all species →		C3ORF6 PROTEIN-RELATEDInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_029957-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K25949CCDC50; coiled-coil domain-containing protein 50-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_029957-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
6TPM > 0
7Conditions
27.4Max TPM
1.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 19.05 27.38
unannotated 1 1 14.28 14.28
live coral tissue/skeleton 1 1 15.60 15.60

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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