Gene detail

Detailed information of FUN_030085-T1 in Siderastrea siderea

Genomic Location: contig_31:3359393...3363386
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_030085-T1

ATGGCCTCGAAGAGAGTTTTGTGTATTTCTTCCTTGGGCTGTCTTCTTGTTTTGCAGCTTTTTCTGTGGTTTCAGTACGGATCCAAAACATCAGTCTCACAAGTTCTTATTACTTTCACAAGACCTGAGCGTTTCGAAACAGTAGCTAGAATATCTTGTCCCGGTTTTGGTTGCAATTACCCTGATAACAAGACATACAGTGCCAGCCACAAAttcaaaatcatcatcatcggttCAGGACCAACAGCTCTGGGAGCCGCTCTAAGACTTCACGAACTTAAGAAACAGTTTCCAAACATATCGATAGCCATTCTTGAACAGATTGGGAAGCCCGGAGGACTCGCTGCGTCTGAGAGAGATGAGCAAGGCTTTCTTTGGGACATGGGTGGTCACGTGGTCTTCTCGcattacgagtatttcgatgcAACTCTCGACAAGGCAGTGAAAGACTGGAATCAGAAACAAAGAGCGGCATATGCCTTCATGAAGGGATCTGATGGCAAAAGGAGATTTATTCCATACCCTGTGCAGAATAACATCGAGGTGATGGACAAAGTGGACCAACAAAAGAGCTTATCAGGTTTGGAAGAAATTGCCACCAATCCGGTAAAAGAAAAGCCTGCCAACTTTGACCAATGGCTTCTTCGCAACTTTGGTACCGGTCTTTGCGACGTGTTCATGAGGAAGTATAATAGAAAGGTTTGGACCGTAGATCCTACTGAAATGAACTCTGTCTGGGTTGGTGAGCGAGTTGCTGTTCCAGATATTGCCAAGATCAAAGCTAAGATTGCAGCTTACGACAGTGGATCTCCTGCACAAGACTCGGCATGGGGACCTAATAATGTTTTTCGATTCCCAAAGTACAACGGAACAGGTGGCATATGGAAGGCAGTAGCTGACCTTCTCCCACGTGAGTGGTTTAAGTTTCATCATAAAGTGACAGGAATAAATATCGACGAAAAATCTTTAGTAGTAGAGAGTAGGGAACAGATGAAAGCAGTTCAGGAGTTCAGGTTTGACTCTCTAATAACTACAGTGCCACTCGACATATTTGTCAATATGATAAAGGGAAAGGATGGTTCTCTAGATGAAATGAAAAAACTCACATCGCAGCTTGTTTATTCTCATACTCACGTGATAGGTATTGGATTAACAGGTCAACCTCCGGAAACTCTCTCAAACAAGTCCTGGATGTACTTTCCTGATTCTGATTCTCCTTTCTATCGAATAACTGTTTTCTCCAGTTACTCAGACGATCATGTTCCAATGCCTGGGAAACAATGGTCACTGATGTGTGAGGTAGCAGAACCTAAAAGTAACTCCAGTCCAGAACAATGGGCAAAGGATCATTTAATTGACTCTACCATTCAAGCGTTAATCACCTATGGATTCATCACATCAGAAATGGTTGTTTCAAAATACTATCGGCGACTAGACCACGGTTATCCAGTTCCTTCTATAAATAGAGAAATGATTCTTGAAAAGGTCCAACCATGGCTGGAATCCAAAGGTATTTATTCCCGCGGTCGGTTTGGAGGCTGGCGGTACGAAGTTGCAAATCAAGACCATTCGTTCATGCAGGGTGTTGAAATCAGCGACAGGCTATTAAGAGGAATCCCAGAGGAAACTTACTTTGACGCTAATCTTGTTAATTCCAGGAGAAACACTGGTCGGACTCACAATGAGCACTTGAAAGACTACGAATTTGTGATTGCTCATTATAATGAAAACCTTGGTTGGCTTGCAGGAATAGCAAGTCACGCCCATGTCTATCATAAGGGAACAGATTTACAGGCGCTCCCATCGCTGAAACTGTATGCCTGGGAAAAGTTACCAAATGTTGGACGAGAGAGTCACACTTACCTTTACCACATCATTAATAACTATGAAACCTTGCCTGAATATACTGTTTTTCTTCAGGGTGAGGGAACCGGAGGATATTGCTTTAGAACACCAGAGGAATTCCTCAACAACATAAAGAATAATGTTATTTGTAAACGTTTGGGCTGGGAAGGCAACTGGGGGAGGCTTCGCCATATTGGCAAATGGCTTAATGACTTTAACAGTGGTAAAATGCGGCATGCTAAACTGCCCATGGGGGAATTTTACCAAGACTTATTTGGCCATCCAAATCCCCCTGGCGCTTATCCATTTTGTCCTGGAGGTTGTTTCGCTGCAACCCGGCAAATGATTAAGAAACATCCGATTGACTTTTataaaaaagccatttcatacATAGATGATCATCCAAACCCCGAAGAAGGTCACTACTTTGAACGACTATGGCCTCAGatattttcttaa

Transcript

FUN_030085-T1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11913 all species →	DUF3431	Protein of unknown function (DUF3431)	Family	Interproscan
PF01593 all species →	Amino_oxidase	Flavin containing amine oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021838 all species →	Family	Protein of unknown function DUF3431	Interproscan
IPR002937 all species →	Domain	Amine oxidase	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43734 all species →	PHYTOENE DESATURASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_030085-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_030085-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples

80TPM > 0

7Conditions

1,447.4Max TPM

468.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
holobiont · low.pH_high.temp	20	20	562.31	1,401.49
holobiont · low.pH Control.temp	20	18	420.53	823.88
holobiont · control.pH_high.temp	20	19	574.62	1,447.35
holobiont · control.pH Control.temp	19	17	453.32	955.40
Whole organism	4	4	6.61	9.30
unannotated	1	1	7.10	7.10
live coral tissue/skeleton	1	1	11.15	11.15

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR22214405	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	1,401.49
SRR22214412	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	1,110.09
SRR22214408	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	950.17
SRR22214409	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	837.06
SRR22214416	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	804.38
SRR22214402	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	770.72
SRR22214404	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	736.58
SRR22214423	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	667.61
SRR22214414	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	516.65
SRR22214407	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	479.94
SRR22214420	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	455.15
SRR22214413	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	365.47
SRR22214406	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	365.46
SRR22214417	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	348.87
SRR22214410	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	324.53
SRR22214419	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	283.86
SRR22214415	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	262.63
SRR22214421	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	227.21
SRR22214403	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	184.88
SRR22214418	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	153.54
SRR22214438	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	823.88
SRR22214442	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	769.87
SRR22214431	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	754.19
SRR22214427	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	694.92
SRR22214430	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	668.85
SRR22214445	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	614.53
SRR22214436	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	593.66
SRR22214428	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	581.84
SRR22214429	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	462.54
SRR22214443	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	356.74
SRR22214426	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	349.20
SRR22214437	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	339.19
SRR22214435	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	316.47
SRR22214441	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	306.22
SRR22214434	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	239.95
SRR22214424	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	200.79
SRR22214439	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	198.33
SRR22214425	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	139.37
SRR22214432	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214440	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214460	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	1,447.35
SRR22214449	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	1,209.62
SRR22214464	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	970.60
SRR22214448	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	911.05
SRR22214458	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	864.11
SRR22214453	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	840.04
SRR22214467	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	783.75
SRR22214450	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	645.40
SRR22214461	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	537.22
SRR22214463	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	524.18
SRR22214462	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	443.33
SRR22214456	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	428.73
SRR22214451	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	410.45
SRR22214447	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	315.44
SRR22214454	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	289.03
SRR22214446	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	254.17
SRR22214459	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	216.71
SRR22214457	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	206.78
SRR22214465	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	194.50
SRR22214452	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214466	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	955.40
SRR22214422	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	925.28
SRR22214471	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	914.85
SRR22214548	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	853.83
SRR22214400	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	787.53
SRR22214506	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	738.31
SRR22214470	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	567.51
SRR22214444	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	494.94
SRR22214547	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	446.72
SRR22214468	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	372.27
SRR22214535	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	358.52
SRR22214492	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	303.71
SRR22214411	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	265.92
SRR22214481	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	263.78
SRR22214469	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	159.38
SRR22214524	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	157.30
SRR22214455	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	47.80
SRR22214433	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214546	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR14295604	Whole organism	Whole organism	not recorded	not recorded	SRP315757	9.30
SRR14295603	Whole organism	Whole organism	not recorded	not recorded	SRP315757	7.75
SRR14295600	Whole organism	Whole organism	not recorded	not recorded	SRP315757	6.98
SRR14295601	Whole organism	Whole organism	not recorded	not recorded	SRP315757	2.43
ERR12861049	unannotated	not recorded	not recorded	not recorded	ERP159209	7.10
SRR12454619	live coral tissue/skeleton	live coral tissue/skeleton	not recorded	not recorded	SRP277390	11.15

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.