Gene detail

Detailed information of FUN_030154-T1 in Dendrogyra cylindrus

Genomic Location: contig_78:230488...240433
NR annotation: XP_022795630.1, spectrin beta chain, non-erythrocytic 1-like isoform X1 [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_030154-T1

ATGGATCTGGAAGAATGTCAAGTCATTGAACACAGATTTGAAGGATTCCAGCAGGAGTTGAATGCTAACGAGAAGCGTGTGGGAGTCGTGAATGATCTTGGAGGCCAACTTATCGAGAAAGGACACATCAACTCTGATGAAATCAAAGACACAATTGATGGTCTCAACACGAAATGGGCAAATCTTCGAAATGCTGCCGACATCAAGAAGGCCAAACTAGACAAAGCGCTCAGACTTCAGCAATTCCATGCTGATATTACCGAGACCAAGCTGTGGATTACGGAGAAATCTAGTCTTTTGCTCAGCTTCGAGGAGGTCACCAACATGAAGGATCTTGCTACTGTTATGATCTTGCAGCGACGTCTAAACAGCATCCAGAGAGACTTAGGACCTTTGCAAGACAAGGTCACAAAGTTGGAAAGCGATTCTGAGGTTCTCTGCTCGGAATACGATGGGAAGCCAGAAGAACCTATCATCAGGGACAAAATGACTGTTGTTAGCAGTGCTTGGGTTGACCTGAAGGACATTGTGAAGCAGCGAGATGAAGCCCTTGCAGAATCTGGAGAACTACAGCGCTTTGTTATCGATCTTGATAACTTCCAGATATGGTTGAAGAATACCCAGAATGAAGTAGCCTCGGAGGAGATGCCAGTGTCGCTGATTGATGCTGAGAAGATGTTGAAAGAACTTGAAGACCTCAAGGATGAGATTGACAGCCGAGAGCCAGACTTCAAGCAGTTGATGGAGAGCGGACCCAAGTGGATCCAGGACGAGTCTGATCTTCAACAACAGTCGCTGAAAGAACAGCTTGATAACTTGGAAACTGGCTGGAATGATGTGCATATCCTGTGggaaaacagaaagaaaatgCTCATTCAGGCTTTGAATCACCAGTTGTTCATCCGAGACTCTAAGCAATGTGAAGCCATTCTTGGCCAGCAAGAGCTGTTCTTGTGTAAGGAAGAAAGTGGAGCCACCGTGGAGGCCGTGAAGGAACTGATCAAGAAGCATGAGGAATTCGAGAAGAGAATGAACGCTAATGATGACAAGATCAACCAAATGATGCAGATTGCTGATCGCCTGAATGAAGAAAATCACTATGCATCTGACAAGATCACTGAGAAAGCTCGCAGCATTGATGAAAGGAGAAATGCCAACCACGACAAGATGGCAGCTGCACTCAAGAGACTTAGAGATGCCTTGGAGTTACAACAGTTTATCCAAGATGCAGAAGACATGTACGACTGGCTTAACGAGCGTCTATTGATCCCGTCAGAGGAGACTTACAGAGACCTGAGCAACATTCAGGGCAAAGTCATGAAACACAGGACATTTGAAGCTGAAATCCAGGCCAACAAAGAACGCCTTGATAACATTTGTGAGGCTGGAAACAACATCGCCGACGAGAAACCCGAAAACAGGCCAGAAATAGACGAACGCCTGGAGAAACTCAACGTAAAGTGGCAAGAGCTTGCAGATGCGTCCAAACAGAAGGGAACCAAGCTTGGAGATGCACAGAAACAAGAAGAATTCAACACTGGAGTGAAAAACATCCAGCAATGGTTTGCGGAGGTTGAACAGACTGTCGTTACTCACGAGAAAGCGACAGATTTGACAACGGCTACAAGAATCTACCAGAAACATAAGATGATGGAGAAAGAAATCATGGCCAGGCGGCAGCGCATGCAGGAGCTGAACAGCCAAGCTCAAGATCTGGTGGATGCTGGTCACTTTGATCCTAACGCTGTGGAAGAAACTCGCATTGTAATGGAGGAAAGGGTTGATGCGATGGCCGCCCCATTGTCCGAGAAGGGCGTGGAAATAGAGCGTACTCTTGGCTTCTTCCAGTTCAACAGAGATTGCGACGATGAAGAGGCCTGGATAAAAGAGAAAGAACCCCTTCTTCAGTCTACGAACTATGGAAACAACGTATTTGAAGTGCAGAAATTACAGAAGAAGCTTCAGCGAGCAAGTCAAGATTCGCCAAGCTCAAGTCGACAAGCTGTACGAGGGACTCAAGGACTTGGCGGAAGAACGCCGAGGCAAATTGGACGAGACGCTCAAGCTTTATCAACTACAGGGTGA

Transcript

FUN_030154-T1

Protein

Uniprot

Uniprot term	Description
Q62261	Spectrin beta chain, non-erythrocytic 1 OS=Mus musculus OX=10090 GN=Sptbn1 PE=1 SV=2
Q01082	Spectrin beta chain, non-erythrocytic 1 OS=Homo sapiens OX=9606 GN=SPTBN1 PE=1 SV=2
Q00963	Spectrin beta chain OS=Drosophila melanogaster OX=7227 GN=beta-Spec PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00435	Spectrin	Spectrin repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018159	Repeat	Spectrin/alpha-actinin	Interproscan
IPR002017	Repeat	Spectrin repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11915	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0030036	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030054	Cellular Component	cell junction	Interproscan
GO:0030864	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0042995	Cellular Component	cell projection	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16732	PRC1, ASE1, MAP65; Ase1/PRC1/MAP65 family protein	-	Cytoskeleton proteins	ko04812	deepkoala