Gene detail

Detailed information of FUN_030278-T1 in Dendrogyra cylindrus

Genomic Location: contig_78:1731251...1746735
NR annotation: KAJ7383624.1, hypothetical protein OS493_026810 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_030278-T1

GCCTGGCAAAAAAAggcaaatccaaaatggcggggTAAGTTCCCGACTTCTGCACAATTCTCCAGAGCCTGCACAAGGCTTCCGAATCAGGCTGGGATTACTTTGTCAGCATTTGTCAGGAAACTCGGGCGGTTAttggggatttttttttcaaggattCGGTGATCGAAAAATTAAATGTGGATTTTTTTGCCCAGCAAATTGTTCCTTCGCAGGATGTACCATTAACTGTTACTGGTGATGGAAGCTGTTTTTATAGATCTATGTCTTTGTTGGTTGTCGGGGATGAGGCCAAACATACTGAAATTCGTGCAAGATGTGTTATCGAGTTGGCACTGCATTCAGAGTTTTACTTGGCGGATGAAGAACTTGTGAGTCGGATCGCAGCGCAAGAGAAACTTCTGGGAGCAGGCGGGAATAAAAGTGGGCCTATAGACGCTGGTTTTGTCACTGAGGTATATAGAACGGAAGTTATAAAAAGCTGTAACCTGTATGAGTACGCCTCGATGTGGCAGCTGCTAGCTGTTGGGGCTGTATTAAGAAGGAAAATAAGAAGTGTTTATCCTGAAACAACACCAGAGGTAAGACAGTATTTTCACATTTTGATAACACCACGTGTCTTTGACGAAAAGCCTCCATTGGCTGTGCTTTGGAGCAAAGTGGGACCAGTGGGAAATTTGAGGGATTTTGTTCCAAACCATTTTGTACCACTTGTATCTAGAAATATGATATACTTATCAGACTATGACTACTACAACAAGTATGTGTACTGGACAGATGTGAGAGATGAGAAGATTTGCCGTGCTCACTTTCCCAGCTCAGGATCAGCTGCAGCTGACTGTGAGGAGATTGTATCTCGTGTGCACACCCCTGACGGCATTGCTATTGACTGGGTCGCCAAAAAAATCTACTGGACGGATGGAGGCTACAACTTGATTGAGGCGGCAGAACTCGATGGTTCTAATAGACTCACACTTTTTAGTTCTGGATTAGATGAGCCCAGAGCCATTGTCGTGGATCCATTTTATGGGAACCTGTTTTGGACTGACTGGGGTGACAACCCGAGGATTGAAACAGCAGGCATGGATGGAGACCCTGCTACAAGACAAACGATTGTCTCTGATGGGATTGGCTGGGCAAATGGGCTGGCCATTGATTATACCCTGAAAAGACTGTATTGGGCTGATGCTAGgttGAAGAAGATAGAGTCCTGCAAGTATGATGGTTCTGACCGACGTGTTGTTGGCAATATCATGCCCCATCACCCATTTGGGCTGGGCGTGTTTGAGAACCATGTGTACTACACAGATGGGTTCAAATTTGGCAAGGGAATCAGAAAGCTAAACAAATTCACTGGCGGGGATAAACAGAAGGCTAAGCCTACCCTGTGGTCCCACATGGACATCCATGTCTATCATCCTCTTCGTCAGCCAAATGCCACAAACCCATGTGAAGTGAACAATGGTGGATGCACCCACCTGTGCCTATTAGCCAGAATTCAAATTAAGTCTCATTCATGCCGCTGTCCCAATGGAATGAACATGTCTGGGGACGGCGTGACATGCACAGGAACGCCTATCACAGGACAACCAACCCCAATGCCAGCCACACAGGCATCAACTGCAGTAACCACAGCAAAGGTAACTCCGGCTACTAAATCCACAGCAAAGGTAACTCCAGGCTCTACCAGATCCAACGTACCTGTGTCTAAGCCTTCTAAAGCGCCTTCAGACTTCACTCCAGGACCTACCACTTCCAATATACCTGCATCCAAGCCTTCAGAAAAACCATCTACCACAAAGAGTGCAAGCAATTTTAACACAACTGAGGGGAATGTTGATTTTAGAAAAGCAGATGAGTCAGAGAAGGAAGGTCTTTCTGGTGGAGTCATAGCTGGTATAATTATTGTTGTTGTCCTGATCATCATTCTTGTAGCTGTTGCCACTTGGTATGTGCGTAGCCGCTCTCGCTACTACCGTGGGACCAGCATCAGCTACTACAAAGACATGACTACCAAGCCTCTGGAGGAAGACTTTGATGATGACGAGACAACAAAAGTGTTTGATGACAGGGGTTCTCGTGAAAAGGTTGAATTTGCTTAA

Protein

Uniprot

Uniprot term	Description
O88572	Low-density lipoprotein receptor-related protein 6 OS=Mus musculus OX=10090 GN=Lrp6 PE=1 SV=1
O75581	Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens OX=9606 GN=LRP6 PE=1 SV=2
P98158	Low-density lipoprotein receptor-related protein 2 OS=Rattus norvegicus OX=10116 GN=Lrp2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF14670	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR050778	Family	Cueball/EGF/LRP/Nidogen	Interproscan
IPR047273	Domain	Vertnin-like, ovarian tumor domain	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0017147	Molecular Function	Wnt-protein binding	Interproscan
GO:0042813	Molecular Function	Wnt receptor activity	Interproscan
GO:0060070	Biological Process	canonical Wnt signaling pathway	Interproscan