Gene detail

Detailed information of FUN_030331-T1 in Acropora pulchra

Genomic Location: ptg000023l:10624733...10625495
NR annotation: CAH2019510.1, unnamed protein product [Acanthoscelides obtectus]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P84227	Histone H3.2 OS=Bos taurus OX=9913 PE=1 SV=2
P84230	Histone H3.2 OS=Cairina moschata OX=8855 PE=2 SV=2
P84229	Histone H3.2 OS=Gallus gallus OX=9031 GN=H3-I PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0117700 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00125 all species →	Histone	Core histone H2A/H2B/H3/H4	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000164 all species →	Family	Histone H3/CENP-A	Interproscan
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan
IPR007125 all species →	Domain	Histone H2A/H2B/H3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11426 all species →	HISTONE H3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000786 all species →	Cellular Component	nucleosome	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0030527 all species →	Molecular Function	structural constituent of chromatin	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11253	H3; histone H3	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.