Detailed information of FUN_030496-T1 in Acropora pulchra

Genomic Location: ptg000023l:11002019...11004446
NR annotation: KAH0510047.1, Histone H2B type 1-M [Microtus ochrogaster]
Species abbreviation APULC · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P35067Histone H2B OS=Acropora formosa OX=126732 PE=3 SV=1
P07795Late histone H2B.2.2 OS=Psammechinus miliaris OX=7660 PE=3 SV=2
P07794Late histone H2B.2.1 OS=Psammechinus miliaris OX=7660 PE=3 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000395 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15511
all species →		CENP-T_CCentromere kinetochore component CENP-T histone foldDomainInterproscan
PF00125
all species →		HistoneCore histone H2A/H2B/H3/H4DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001951
all species →		FamilyHistone H4Interproscan
IPR000558
all species →		FamilyHistone H2BInterproscan
IPR009072
all species →		Homologous_superfamilyHistone-foldInterproscan
IPR035425
all species →		DomainCENP-T/Histone H4, histone foldInterproscan
IPR007125
all species →		DomainHistone H2A/H2B/H3Interproscan
IPR004823
all species →		DomainTATA box binding protein associated factor (TAF), histone-like fold domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23428
all species →		HISTONE H2BInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0030527
all species →		Molecular Functionstructural constituent of chromatinInterproscan
GO:0000786
all species →		Cellular ComponentnucleosomeInterproscan
GO:0046982
all species →		Molecular Functionprotein heterodimerization activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_030496-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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