Gene detail

Detailed information of FUN_030525-T1 in Colpophyllia natans

Genomic Location: contig_84:1206709...1219806
NR annotation: XP_020632581.1, uncharacterized protein LOC110069394 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_030525-T1

ATGAAGTCTCCTGGAATGAACCGTTACCACTTCTTACAAGTGTTTGCCCTCTTTTATAGGCAGGCTGTTTTGTTGGGGATCGGGTTTGCATCAGCAATTCCCATTGAACCTCCTTCAGTAATAACTGCCTTTAATACAAGCTCTTCATCCATTAATGTCACGTGGGGTTGGCATAACGAAGATTACCAAAGCATACACAGTATATCGGGCTACAAGCTGACGTACAGGGAGCCCAGCAAGACTAATGAAGTGTTCAACTTCCTGTGTACACTGAGTTCCTCAGCGGAATTGACCAAGTTGAAAGTGTTCACGAAATACTGCGTTGAAATAGCTTCTTTCACTAACAACAGTGTTAGTAACCGAAGCCATTGTTTGCTCGTGAGCACAGATGAAGAACCTCCTAATGCTCCGCCTCAGAATTTCACAGTTTTTAGCATCAGCTCCACAAGCATTCGAGCTACTTGGGCTGCGCTTCCTTTCGAAAACAGACAAGGAATTATCCTGGGATACCGACTTATCTTCAGCAAGTTGTCCCTCAGTCGTCGTAAACGTCGGAGCACTGAAAGAATAGTAGAAGTGAAAGCCCGTGTTCTTAGCAAGGACCTAGTCGGATTGGAAAAATTTACCAACTATTGTGTGCGGGCTGAAGCTTTCAACAGTAAGGGAAGCAGTAATCAAACAAACTGTACCTGCATAAGAACAGACGAAGACGTACCAAGTCATCCTCCTCGGATCATTTTGGGGCACAATACAAGCTCTACCAGCGTTTCTGTTGGGTGGGATGCCATACCAACAAAATTCATTCATGGAATACTTCTTGGCTACAAAGTGTTTTATCGAAAAACAAGTGAAAACCCTTCTCAATATAAAACCCTAGAGACTGATCAGTTAGGAATCAGCTTGACCAACCTGGAGAAGTTTACGGAGTACTGCGTACAGCTGGCTGGATTCACAAGAATCGGAGATGGCAACAAAAGTAGATGCTTCAATGTAACGACCGATCAAGATGCTCCCAGTGGAGCTCCACAACCTGTGGCGCAAAGCTTCTACAGTAAAACTGCTATCATGATAACTTGGGATTTACTTCCAGCAAGTGTCTCGCATGGGATAGTGCTTGGATACGAAATACACGTCAAAGAAGTCACAAGCGACACCGATTTTCCTGAGGATCTATTAGAGGAATGGATACTCATAGAAAATGCTTCACAATCTTCGTTCAGATTTGAAAATCTCTCTCTAGCCACAAAGTACCAAGTTCAGATGGCTGCTTACACATCTAAGGGTGTTGGACCTTTAAGCGATTTTATTTACGCTGAAACCTGTCGCTGTCCTAAGCGGCTCTCAACGTTTAAACGTCCGTCATTCCTGGACAAGGGTGGACTCGGAGGTATAAGTGAGGTCATCGGCAATGTAATTATAGAATCGTGCGGTTACTGCATAGAACACGGAAAATCCGTGTTGGTATTCACCAACGTCGACGATGGAGAATCAAACGTTCGTTTCCCGGTGGAAGTGACGAGTCCAAGAAGTAGCGACTTTAGTAAGTTTGTGGCTGTGTTGGAGGTACCTGGAGTATTTATCATAAAGAGACGAGACGAGTCTACACTGCGTGTCAGTGAGAAGGTTATGACTAGTTCTGTCCTCGATACGTGGCCGGTTATCGCTGTGTCTCTGTTAATGATTTACTTTGCGGGTGTCACACTCTGGTTTCTGgatAGAAAAGGAAACCCTGACGATCTTCCCAGAAATTTCATTAAAGGAGCTTACGAGGGATTTTGGTGGTCATTCATCACCATGACAACCGTGGGTTATGGCGACCGCTGTCCAAAGTCCTTCTGGGCCAGAGCTTTTGCTATCGTTTGGTTGCTTGTCAGCATGGTGTTGTTTACGTTTTTTATGGGTTCCATCTCATCTATTTTGACTGTTACTGTGATGCGTTCAAGAACAACAGTGATTCGCAGCGGTGGAAATAAGGCAGCAGCAATCGCTAACTCTTCAGAGGTAAAGCTGGCCTTAGGATCTCTGAGCAGCAAGTTAAAATTAACTGAAACATATCCAACCGCGGAAAGGTTAGCTCAGTCGCTAAAGGAAGGCGAGGTTGACTATATTCTTGTTGACATGTACCTTCCTGTAAAACGGAGAGATTTGTTCAATGGCTCTTGGTTCGAAATTGTGTCGTTGTTGAAGACAGAAGTGTTCCACGGTATAATTCTACAAGGAGACGCCTTAAAACTGGCCTCTACACTGGAAGCGATGATTGCGAACAACAACGTACAAACTAAATTTCTTGCGGACAGCGACACTGAAGAGACTTTACCCAGAGAGAGAGAGCTTGCCATGCCAAACATTTTATATTTCCGAACAGGGTCCAACGGAAGTGGAGTCAAACGAGTCTCTGTTCTTCGATCCAAGCAGTCCATTCTTCCAGCACATCTTGTATGGCAGTCTGGGAGCGTTGGGCCTATTCTTGGTCTGTGGATTGCTGTACCAAGTGCTCTTCTTCAAAAGGAGAACACACTTAAAATGTTGGTATTTTCCTTTTGTAACAAAACTTACATTTAA

Transcript

FUN_030525-T1

Protein

Uniprot

Uniprot term	Description
A2A8L5	Receptor-type tyrosine-protein phosphatase F OS=Mus musculus OX=10090 GN=Ptprf PE=1 SV=1
Q64604	Receptor-type tyrosine-protein phosphatase F OS=Rattus norvegicus OX=10116 GN=Ptprf PE=2 SV=1
P10586	Receptor-type tyrosine-protein phosphatase F OS=Homo sapiens OX=9606 GN=PTPRF PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00060	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF07885	Ion_trans_2	Ion channel	Family	Interproscan
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001320	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR013099	Domain	Potassium channel domain	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44170	PROTEIN SIDEKICK	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015276	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan