Gene detail

Detailed information of FUN_030654-T1 in Dendrogyra cylindrus

Genomic Location: contig_81:778428...783139
NR annotation: XP_020622802.1, dnaJ homolog subfamily C member 28-like [Orbicella faveolata]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_030654-T1

tcgcagtgaatttccaatttaagcaataggaataaagaagcctgaaaaaaatcagggcttcaacgggattcgaacccgtgacctccgcgataccgcgataggaagccacacattgggagcgaggtcaattgtgagtccatattttcccgtgaaaggagtgaaatgatgtaatgtatatgaaatgattcatatgtgaactgcggatatatatgtgGTTTAGTTTCGAAAGAAACTGGcactagtaaacaaaatgatgGGTGAGAACTTCGGTTACgtaggttacgccgaagatcttcggcgtggatttCGAAACTTGGCGGCGTACTGGCGTACGATCGTATTCGGAGCGTTTTAACGGCGTACAATCGTAGTCGGCACCTTTTAACTGGcgtacagatgacttattttagATATGTATGATAAAGGGCCTTGGCGTAGACCTATCAAAAaacttggcgtatcttcggcgtgGCGTTATCACGAAATGCATCCTGTTTTGTCGAGTTACAGAGTTCCAAACGCTGCAAAGCTTACTGTATATGGCCTATTTCAGAGAGAAGTCAAACTTACAAttcgagtaaaaaaaaaaattcatgtgttgtcgatccgagttgatccgagttgatccgaccAGATCCGATCCGGactggtccgagttgatccggtccgatccggtccAAGTTTTGTACCTGCCTCAAGAAAACGCGCAACGCAGTGTGGGATGTCAGCGGTCTCTTTACCCGCGCAAGGTTCTTCATGTAATGCCGATGTAATGCCACGATTATGTAATTGAACATCACAACAAACATGTCGGCGACCTGTCTCTATCGAAGATTGTATCACATTTTGTCCATCAATACTACGTGTAAATTCCAGCCAGTGTTGCGAGGTTATCCCTTATTTAGCCACGCAGGCCGCATGCTGTGCATGCGAGCGCCCAGCATGAAAGTAAAGGACTGTTATCTTTTACTCGGAGTCGACTGGAGTGCAACGGTTGTGGATGTTCGCGAAGCGTACTTGAGACTAGCCAAGCTTTATCACCCGGATTGTGGCAGAAAAACAGCTGATGCTGACAGATTTGCGCGAATAGAACAGGCGTACAGAGTGGTCATGGATCACGTAACGACTGCATCCCAAGAAGGTCCAGAAGTGAGCGATCAAGATTTTGAGAAGGAGATATTCGATATCCATCACACAGCTCCTCAGCATAGGCAATACCTAGAATATGAAGGCATTGGGTTTGGTTCACCTTCCAAGAGGCAAAAACAGTACCAAAGCTACAAGGTGCAGAGAGCTTCAGACAAAGTGATTGACCATAAGACTCGGCAGTTTGGAGAACAAGAAACATCCATTGCTGAACCTGAAAAGAGGGCCATAAGGAGGTCAAAATACTCCAAGGTCATTGACAGACTTGTTGAAGATCTCATCCAGGAAGCCATGTCTAAAggagaatttaaaaatttatctgGTAGTGGAAAACCACTTAAGCTTGAGCAAGAGCTGTATGTTGacTCTACCACTCGAAGGCTCAATAAAGTATTGATAGACTCGGGATTTGCACCGGAATGGATTGCACTCGACAAGGAAATACGGCTTGATATCAACCGGCTAAGAGAAACGTTGCTGGGGAAAAGAGCAAAACTCGGACCTAGTCCATTAACATTGGAAGCTACTATCACATGGGAGCAGGATTTGAAGGAATTTGAGGAGAAGTTCCGTATTATTAACCAGAAAATCGATAAATTTAACATGATTGTCCCCATACTAAATAAACAAAGAGTTCATGTAAACTTCCAAAAGGAAGTCAGCAGGACAGAGGAGGGCTATGGTTATGGATTGGCGGACGACAGTGACGTTGAACCGAATTCTTGTGATGAAGGAAACAAAGATGAACGTTATAGTGTTATTTTGACTTTTGTTCGAAAACTGCTCGAAAAATACAGAGTTAAGTTTCTAAAGGGATTCAGTGAAAGTGGCGACACATgataacggcgaacggattacTGACATCCATCTGCCTCTTGAGACAATGGAATATCTGTCCTCAATCGTCGAAAAATACGTGTAATTATGTTCTACAGGAGCTACTGTGCTCCTGATTATGCCGGGAAAATGATGCCCTTACCCCTCCCCCCGAAAAATGGCTTCGCTATCCATCTTCAAAGAAAAATGGTCACTTCCGCTACgagcaaaaaataatcatgctGCACACGGTCAGGAATCAAGCCTATAGTGTAACAACAGCAGCTACTTCCAATAATCACAGATTTTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VCE1	DnaJ homolog subfamily C member 28 OS=Mus musculus OX=10090 GN=Dnajc28 PE=1 SV=2
Q9NX36	DnaJ homolog subfamily C member 28 OS=Homo sapiens OX=9606 GN=DNAJC28 PE=1 SV=2
C4L424	Chaperone protein DnaJ OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) OX=360911 GN=dnaJ PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002571 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09350 all species →	DJC28_CD	DnaJ homologue, subfamily C, member 28, conserved domain	Domain	Interproscan
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR052573 all species →	Family	DnaJ homolog subfamily C member 28	Interproscan
IPR018961 all species →	Domain	DnaJ homologue, subfamily C, member 28, conserved domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR39158 all species →	OS08G0560600 PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for FUN_030654-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19373	DNAJC28; DnaJ homolog subfamily C member 28	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.