Gene detail

Detailed information of FUN_030655-T1 in Dendrogyra cylindrus

Genomic Location: contig_81:785168...789199
NR annotation: KAJ7388766.1, hypothetical protein OS493_035877 [Desmophyllum pertusum]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
P0A9Y1	Cold shock protein CspA OS=Escherichia coli O157:H7 OX=83334 GN=cspA PE=3 SV=2
P0A9Y0	Cold shock protein CspA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=cspA PE=3 SV=2
P0A9X9	Cold shock protein CspA OS=Escherichia coli (strain K12) OX=83333 GN=cspA PE=1 SV=2

Gene family	Subfamily
Transcription Factors Family	CSD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00313	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR002059	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR011129	Domain	Cold shock domain	Interproscan
IPR019844	Domain	Cold-shock (CSD) domain	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR051373	Family	Lin-28 homolog RNA-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46109	PROTEIN LIN-28	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0031054	Biological Process	pre-miRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18754	LIN28; protein lin-28	-	Messenger RNA biogenesis	ko03019	deepkoala