Gene detail

Detailed information of FUN_030865-T2 in Dendrogyra cylindrus

Genomic Location: contig_82:1691132...1702949
NR annotation: XP_020624576.1, transcription termination factor 1-like [Orbicella faveolata]
Species Dendrogyra cylindrus · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_030865-T2

gaacgccaagctacgctggctaaaacattcccataaaatgatctgaagATGAGAGGGATACGAGGGCATGACATTGGTTCACGGTTGCGTGACGTCGCGTTGGACTGCTCAAAACCGAAAGAGTCTGGGACCATTAAGATACCCCATGATTCTTTGCTGTCTCTATattttcaatatggcggctgttgaTGCAACTGTGTAGAAGTTGTTAAGTGGAGATGAAAATAACCCTCCCATCAAGCCTATAGCTTGTAAAAGAATGTTCCGTTACTACCAAAAGGCGCTGAAGGAGTTAGAGAAAAGTACTGACAAGCAACAAGCCGTGGCTGAACTTGGAGAGCAACATTATGAGCAAAGTGTCAATGACCATGCTTCGGTATATAACCAAAAGCGCACGAAACATGATGAACGGGACAGATATCATAAACGTGAAAAGAAGAGAGACAAGGAATTAAGGAAAACGGAGAAGAGAAATAAAACTATGGAGGATTTGACAACGATCGAAGCAGTGACTAAGCACGATCATGTGAATGTGAGTGAAGTGAggaagaaaacaaagaagaaaaagagaagACATTTGGACAGTGACGTTGAGGCAGTGAACTCAAGTGATAGAGAACGTTGCACAACTCAATTTGATAAGTCAAGAGTTGTTGATTCGTCAATCGTTTCAAGTAATAATGAgatcaaaaagaaaagaaaacgtaAATCCGTGACCGAATTTTCAGAAAGGGCTGTCAAAAAGAGTAAACAGAGtgaaagaacatctaagtctcGGAAACATAGAGTCAAAGAGAAATGCGATGAGATGCATGAAAGTGATTTTTCTTGTAATCAAAGAACAGAAAATATGTATACTTCTGCAGAATCAAGCACACTGGAACAAAAAACACATAATTTGGAAATCTCTGCTGGAGGTTCTCCCCAGTCACACAACCATCTTGCCAAAAAGTCCTCACTATCTGGAAAACAACACATCtctacagaaaagggcaaacagcagaaaaagagaaagaaaaggaCAGACAATTTTATGGCAGGCATAACTGTGGACatagataattttttaaatagcaGTGATAATATAAAAGAAGTCACAAAGTCAAGAGTTGGGCCAACAATCATATCGAATATAAAAATAGATGAGGCAAAGCTGAGAGAAGCGACAGCGATTTCCAATAAAATTCATGAAACATGGACACTTCCTAAGGAAAGGCTAAAGGCATTGGCTGAGAAAGGAATCAAGGTAAAAAAAGGAAAGTGGTCCAGTCAGGAGCTTCACTTGTTAAAATTTAATATGGCTCGTTTTCTAGAGCGGCACAGTCTGGCAGACCCCAACCCACTTCTATTTCGTTCAAGTATGGATAGCATGGAAAGGAAGTACTGGAAGCGCTTTGCCAAGAGCAACGAATTTTATAGTGAACTAGGAAAAGGCATTCAAAGAGAATTGTTCTCCATCTACAAATGTGCGACCAGAATTTTTGATGAGACAAATTATGTTGGAAGGTACAGTGAAGATGAAATTAAAGAGCTAAAAAGATTACATGCAATCCATGGATCAGACTGGGTCACTATCGGTCGGTTGATGGACAGAAGTCGCATGTCTGTAAACCGCAAGAATTCAAAACTACCACCTACAtgcaaagGTGACAAACAGGAACAGAAACGCAAATGGACAGATGATGAGGTTCAACGGCTTTACGAAGCTGTACATTTGGTTACGAACACTGCTGATGGGCAGCCAGTTTTTCATGGTATTGACTGGCAAGGCGTGGCCAAAATTGTCAAGTCCAGGGGCGCAGAAATGTGTAGAAAGAAATGGTTAAACAAGCTGTGCTGGAGCAAAACAGAACGTAAGACAGAAGGGAAGTGGACGAAAAATCACGAACTCAAACTTATAGCAAGATTATATAACTCAGGAGTCATGGAAGAGTGCGATGTGGATTGGATGGACGTGAAATCTGAGTACGACATCGATTACTCGCCACAATGGCTCCGCCAGAAATGGTCACAAATAAAAAAGAACGTCCCCAACTACCAACGATTGAACTTTGAAGATATCGTGGATTATTTGTATGGGATATACGGCCAAACTCTGAGAGATCAAATTCAAGCTGGAACGTCCACTAGCAGCGAGACAGCCGAGTGTTATTGACACCCTTGATGTCTGATAGAACTTGTTGTAATATAAGAACGACAGCGACAGCAACAGAAGTAACCATAGAGACGAGACACAGCTGTTTAAACAGGGTGGTCAGGAAAACTTCGTCCACCATTGGCGGTCACGTGGTCAAAAGTGTGCGCAAATTAGCTGTACACCAACTTTCTAAAGTGGTCATCAATGTTCCAACCCATTCGCGTATTTAAAAGTATTCAAAATCCCTAGTTTTGCAAAAGGTATCTAGGTCcacgaaaatgaaatttaagacAAAATTGGTGGTAGTGTGTAGCGTGAGTACAACGTTTTCAATAAAGTCATGCATGTACAGTGTACCATAGTAAAGAGAGAAGATTTTGAGGACATCTATAATCGAGCAGTTCTATGAAGATCAGACTAACTGCTTAGCTTACATGTCCTTAAGAGTTCACATAGACTCTGCCTGATGCCTCGATTTCTCCAGACGTAAATTCCAGGATTCACACAACTGTTGAAAAGAACTGCTGTCTCACCAATTGGATAAATTACATGATACAGAAGATCTCTCGGCGCCAGTCCTGCTTGATCGACTATAGTGGCACCCAAAGTCGGCGTGAAGCACAGAAACAACGTTCCTGCGACAAAAGCCACAGTTTTGGAGGCTTTCGCTTCTCGAGGATTTGAGTTCATCTGAGACGGAGGCTCACCCTCGGATGTCGAAGTATGTTGTGAAGTTTCTACGTTGACTTGGGCGTTGCAACGTTTTACCAGTCTGAATATTTTAAAGTACACGAAAGAGGTGACAAGAAAGTTAGTGATAATAACCAAAGAGATAACTCCAGTTTCCTCGTTGCTGTTTATCCCGAATAAAAAACGCACAGTCAATAATATCGCAATCGAAATCAACCAGACCGTGACAGTAACCACGATAACGCGTTCAGAGTTAACCTTTGCCACGTAAAGATACGGATAAAATACCGCAACGTATCTTTCTAGCGAGATCAGAATCAGTGTAAGAAACGACATGCAGATACATATTGCCCCAGAGAAGGAGTAGATAAGCAGCTTATCGCACGGAAAACTGTCAGGACTCGCGGTCAGTTTGCTTGCTTGATAAACAACGTAGGAAGGTTGAACAAAAACCCCGACCATCAAATCTGTGAACGCCAAGCACAGAATAGAAGTGTTTGCCACATTTCTCAGTTGCGGTTTTCTGAGTACAGCCACGAAAACCAAAATATTCCCTGCGACTGTCAATGGACACAGAACGCTGTTAACGACGCACAAGACGATCGACACTGACCGAAACAGGGCAGCTGGAGTGAAGGGCACCATCTTGAGACCCAATAATCCAATGTCTTCGCAAACAAACTTCTCGGTTTGACTACTAGAATTCAAGGCTGAGAGTGATCCTTCGCCCATCTTGAATTTGCTTCGAGTTATTATCTGAGAAAAAAGTGTCTTAATTTTCAGCAAAGTCTGCATGTAATTTTGTAGACCTTTGAGCTTTGTAATGGATGATCGTGCGTTACATCTGTCAATCATTCTCTGTTTATTTGTCCTCTCGACTTCCGCTTAAATTTACATTAGGGTCAGGTGCTGAAAACATTTTAATCTCATCTGTTTGTTTTGAGACAAAAAAATCTGGCGGGCACTGCATACTGAGTAAACTTTAATATGACGCTTCTTTAACCGATATTATTTTAGCTTCATTTTGTTTCAGCAAGCTTTAGATGTTGAGTCAACAGAAACTAATACGCTTTTCTCGTTTCATCTCATCTTGAAAGCTCTCTCAAGATTTCTGAGTAGCTAGCTTTGTTCTCGCCGGCCTTCTTCAAATTGATCCGGTTTTCATCAATGCAATTAAATATTGTAGCATGTTTTTATTCCGCCCGAGTTATTAACTTCATTTAGAAAGGATAGTCAATAATTATTCACTCGGCAGTGTGTCGGAAGTGTTCTTATCAGTCGATAACACAGCTACAGCCCCC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001368 (this species only)
Transcription factor family	MYB · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR053078 all species →	Family	Transcription Termination Factor 1-like	Interproscan
IPR017930 all species →	Domain	Myb domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46760 all species →	TRANSCRIPTION TERMINATION FACTOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006363 all species →	Biological Process	termination of RNA polymerase I transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_030865-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.