Detailed information of FUN_031105-T1 in Siderastrea siderea

Genomic Location: contig_32:4732132...4734300
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00646
all species →		F-boxF-box domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001611
all species →		RepeatLeucine-rich repeatInterproscan
IPR001810
all species →		DomainF-box domainInterproscan
IPR032675
all species →		Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR38926
all species →		F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_031105-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_031105-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
62TPM > 0
7Conditions
182.7Max TPM
37.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 13 36.20 182.52
holobiont · low.pH Control.temp 20 12 38.85 129.03
holobiont · control.pH_high.temp 20 16 45.28 182.69
holobiont · control.pH Control.temp 19 16 38.87 87.27
Whole organism 4 3 0.11 0.26
unannotated 1 1 0.01 0.01
live coral tissue/skeleton 1 1 0.92 0.92

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP