Gene detail

Detailed information of FUN_031155-T1 in Colpophyllia natans

Genomic Location: contig_90:613701...650935
NR annotation: XP_027056304.1, uncharacterized protein LOC113683279 isoform X1 [Pocillopora damicornis]
Species abbreviation CNATA · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_031155-T1

cccggacccagagtcgaaTTAAGAGTTGAATTAAGATGGCGGCTCAAAAGTAACGATCGTTCTAGGGGCGCAAAACTAGGACAAACTAGAAAACTAGCTCGTGGCTTGTGgatgaatcaagatggcggcttaaaaGTTATGACTCATCGATCGATCCATCGACCGGCACAAAACATCGCGAGTCTGATTACAGTCTGTTAAGAAAGCTCCCTTACAGAAATATAgggcataatttatatcaggctaaaatcgactctcagtccgggcgaaacgacttcagactcccggcgaatcgactctgggtccgggcgaaacgactccgggcgaaaaggacatcgggcgaaacgaccgtaaacctgtcaaaaccttttgaagaacgaagcggaacacaagagGTGCGACCATGCTGCACAGATGCAAAGCTTTGCTGCAGCAAAGAGTAAGCTTTTGTAGAGCTCTGAGTAATTCTGCCAGATGGAAAACTAAGGACTCACAAAGTGTGAATTCTATCAAGGCTCTGGTGTCTGGAAATGCAATTGAAATAGAATGGAAAGATGGCCACACTTCCAAATTCCATAATAGTTGGTTACGGTTTTGTTGCCAGTGTGAACAATGCAGGCAGGCACACAGTGGCCAGAAGATTTTTGATGTGTTGTCCATTCCAGACCCATTAGAACTATCAGATTTCTCAGTTTCTAAAAATCAGGAGAATCTTCAGTTGACCTTTGAAAATGAAGATCATCATCAGGGAGTGATCAGCTTACAATGGTTGAGAGACAATTGCTATTCTGATACAGCAAGAAAAATTGACGCTCAAAAGAGAATCACACAGCCTCACTTAGGAGAGCACAACCTGCCAGAGGTAAATTACAGTGACATTATGGAATCAAAGGAAGGTCTATGGAAAATGCTGTTCCAGTTAAGTGACCATGGTGTCTCATTAGTCAAAGGTGTCCCACTTGACGAGGAAAATTGTGGCAAGGTTGCCGGTCTATTTGGACCTGTATTGGAAACCATATATGGCAAATCTTTTGACGTCAAGAGTGAGCCTAACCCTATCAATATTGCATACTCTAATGTTGGTCTTGGCCTTCACATGGATCTCATGTACTACGAGTCTCCCCCCGGGCTGCAGCTACTGCACTGCTTAAGGTTCGATCCTGAGGTGGAAGGCGGAGAAAGCTTGTTTTTGGATGCATTCAATGTTGCTGAGGAATTCAGAAAGCAGTTTCCTGAACAGTTTGATAATCTTGTGCGAATACCGGGAACATTTCAAAAAATACACTTTGAAAGGGATTATCCAGTCAAACTTGTGTACAAGAGGCCGCACATTGTGCTTAACCCTGACAAAGAGATTGTTGCTGTGAACTGGTCGCCTGCTTTTGAAGGGGCCCTGTCAGTTCCAGAGGAAGATGTTGAGCCCTACTATGAAGCATACAGAACATTTACGAAGCTGCTTGATGAATCGCCAATACAGaaGTCAGTTAAAATGCAGCCCGGAGACCTGGTATGCTTCAATAATCGACGTGTGCTTCACGGAAGAAAGTCATTTACTTTAAATGGAGGAATGAGATTTTTTAAGGGTGCCTATGTGAATATCGACGAATTTAGGAATACATTTCAAGTGACGTCAGAGCTAGTTGGATCGGGAGAGCCTTGCAAGCGGATTGGGAATCACTGCTACCTATAGGACATAATGTAGTGTAGGCTGTTAGGAAAAGTTAGGAAAGACGTCCGCTGAGAAATTGTGTATCTTAAGCTacgtcggagaaatttgaatagcatcaaatgttttccatccacactgcGCCGCAGAAGGTTAAAAACGTAGCAATAACCGGTCATTGTGTATTTGTGTTTGAGGTATCAAGCATTGTGTTTTCCGtccaaacgaaaacaaaaacgcagcattttgaaattactccTGTTTCTAgggcgtttttgaaaagctctgtCATGAGGGATTAGTCTGGACAGAAGGCCTAACCGTACAAATATAGCTACGTTTTCAGAATTTCTCCCCTTTAGTGTGGACTACTTTTAAAATCATGACCATGACGATGTCTGGAAATCTGATCTTGATAACCATagatttgaattatttttacatttaacCGTTCTCGGTTAAGGGCTTGGCCGCTAATAGAGGcagaaacaatagaaaagcaGTCATTAGGACTTTGACGTCTGGCCGCCTAATAGAGGTGGCCGTTACTTCCTTTCGAGCGTCTCCATGTAGCAGAGTTTTGCTGATTATATTTCATAGCGGTAAAATCGATTCTCATAACAACACGGCAGAATTCTGAAAACGCATGCGCaacttaataattatttttacggTTAGCCCTACCATTCACACTaaccgtcacgaaaacggagctttggaattccgaaaacgctcttcaaagcggggaaaaacaaatttgaatttgaaaacaatttgaaaacgtacggagcttttcgaaaacgatgtaGTCATGACTAGTGATCTCCCTGATCgtgttttcctcaaacaaaTTCGAAAAAAAGcagtgattgttgcgttttcaaatcccTCTGGCGTGTAATGTGACTGAACTCGACAGTCCTGAGGTACATCAAAAAAGCACAACCATTAAAGTTGCAAAGAAATAACTCAAAACTCATTTTTCGTTACGCGTCACAGCTCATCCAAATGGACTTCAGGGGATCgccaaaaacaattttcctctTAAAAGAGTCTTTAGTTTTCTCCAATCTTCGCGGGTCGTAGCCTGTGTCACATGCTACGTGGGTCGCGATTTAAAGTATATCACTTTGACTTCAATTTATCATCGGAAATGAAAGTATTTAATACCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A4V8H042	[2-(trimethylamino)ethyl]phosphonate dioxygenase OS=Leisingera caerulea OX=506591 GN=tmpA PE=1 SV=1
A5DCB6	Trimethyllysine dioxygenase OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=PGUG_00921 PE=3 SV=2
Q924Y0	Gamma-butyrobetaine dioxygenase OS=Mus musculus OX=10090 GN=Bbox1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005841 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06155 all species →	GBBH-like_N	Gamma-butyrobetaine hydroxylase-like, N-terminal	Domain	Interproscan
PF02668 all species →	TauD	Taurine catabolism dioxygenase TauD, TfdA family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010376 all species →	Domain	Gamma-butyrobetaine hydroxylase-like, N-terminal	Interproscan
IPR038492 all species →	Homologous_superfamily	GBBH-like, N-terminal domain superfamily	Interproscan
IPR042098 all species →	Homologous_superfamily	Taurine dioxygenase TauD-like superfamily	Interproscan
IPR003819 all species →	Domain	TauD/TfdA-like domain	Interproscan
IPR050411 all species →	Family	Alpha-ketoglutarate-dependent hydroxylases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10696 all species →	GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0045329 all species →	Biological Process	carnitine biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_031155-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.