Gene detail

Detailed information of FUN_031221-T1 in Colpophyllia natans

Genomic Location: contig_90:1037925...1046292
NR annotation: XP_020627509.1, tip elongation aberrant protein 1-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_031221-T1

TAAAAGGTCAACGAAAATACTTTTGTTAGGCAACCTGTCGCATATTGCGAGTCGGATCCATATGATAGGTTTTTTGAATTATTAGAAATTCAAATGTTCAAGTCCGTCATTAGCATTTGAAGTGATAATTCAATTGTGGATATCTGTAAGATTTCTCTGTGCGCTTCGCGGAAAGAAACGTGGCGCGGTTTCCCTCGCTTTACAGTAAAGGAACAGAGAGGGAATCAAAATAAGGAAATTGCGAAAAGAAATTCAAATGGAAAACTAACCAAGGCAGAATTTGTAAGCTGGATGAGAAGACACCCTCTCATTGCGGACTCGGTATTTCAGCATTCCAGCATTACAGACAAACAGTTAAACACAGGACTACAGAATGGTCGTGTTCAAGAGAGTCACAGGCCACCTGGGCTTGTAACCAGTACAGAACAAGGAGCACGACGCACAGAGCTGCTAAGCCAAACGTGGGTTGATTGTTTCAAACGGGATGCAGAAGAGGAACAGGCTGCTAATGAGCCCGTGTTCAGCGGTAGTTATGCGGACGCGGATTACTTGTGGAGTCCAGTGTTCCCGGCCAGCCTAAGTATTCCTTGTGCGCGTAACAGGCATTCGGTGTGTGTTTGGGGTGGAGGTGTGTTTGTGTATGGAGGCCGAGGAACTAGAGGAACACTCAAAGACTTCTGGAGATACGATATAGCCTCCAACACGTGGAATAACGTGCCTGTTGAAGGCGAGTTGAGGCCACCATCCCTACAGGAACATACTGCATTAACATATAAGggTACTATGTACGTATTCGGAGGTGAATTCACCGCAACAAACGAGACGCCATTATGGACGTTCAATTTTCGTGAGCGCGTGTGGAAAAAGCAGGCGGCAAAGTCCTGGGGCCCAGGCACACGGCGATCACATACAGCCGTGATCCACGAGACTTCGATGTTCGTATTTGGCGGGTATATCGACATGAGAGGTGCAAGCGACGAGCTCTGGCAATACGAGCTTGACACTTCAAAGTGGATCAGGATAAAGTGGAAAGGAGACGGGCCGTGTCCGCGTTACAATCATTCAGCGGCCGTTGGCGCGGCTGGGATGTGGGTGTTTGGGGGCTTGGAAGGTCTACAGGCCAGGAACGATCTTTGGAGATGGAGCTTTGTGAGTCACTCGTGGTCCAGAATAAAGAGTCGAGGTGGTCCCCCGGCCTTGTTTGGCCATTCTGCGATGAAGGTTGGAGATGGCATGTTAATATTTGGAGGTGAAACAACTGATGGCGCTCTACAAAGTACAATGTGGCGATTTGATTTAGATAATCGCACTTGGAGCACTGTTCACCCGCGCGGTGGCATATCCCCTCCAGTCCGCAGCTGTTTCTCCCTGGGAGTAGTTCCTTCATCCGCTTTCCTTTTATCCATTCGACCATGTACATCTCATTCTGCCCCGCCCTGCACCCCTATGCCTTCGGGTATCCTGAGAGAAGAGAGCTTTGACAGCAGACCGAATACCAGGGGGAAGTCCTGGTGCGAACCTTTTACCGGGTGGGAGAGTTCTGTGGCGTCACTGGGTTCCATTGATTCCGCGGCCCCGTTACCTGGTACAGCGGTAACTTTAAACGACGATAAGCGCCGTCAAAATCATCCGGTATCTCGCTTTAGCTCCGAGGTGTACGAGAATTGTAAAGGGATGACTCTATCGGACGACTCTTTACACGCAAAGCAACACAATACCACGGGACATGAGCCTCGTCCTCAGTTGAAGGCGAAGACTCTACCCGCCCAAGGTCCCCTCTCCCgggacaaaaaaggtcgagtgcaCAGCCAAGAACTGTTGAGTGTCAATTCTTCTGTTAGTGCGGATTTGAGGAAGAGTTTGACTCGTCCTGTTGCCTGTCTTTTGGTTCTTGGCGGAAAGACGCGTACCCAGGCAGATATGGGAAGAAGCCTTGACATGTGGCGATGTGATATTGATCCAGTCAAGAAAACCCAAGCAGAGCGAGTGGAAAGGATCACCGTCTCAGACAACCGTGCGGCCGCGCCTTCTGTTCCCTATAGTCATTTGGATCCTGCGCCTTCTGAGAACTCCGCTGGCGCTGACGACGACATTGACTCAATCGGCAGTGACTTGGTCTTGGCAGACATGTCTGATAGCGACACGCGTAGTGTGGATTTCTTATTGGACGATTATGACGAAGTCACGAGCACGTCACGTGGTTTTCCTAAAGTGTCCGTATGACTTATAGACGCTTAACGCGTCAGGAATTGACCGGTTGAACACTGAAAGATTTGATATTTTTCTTGTGGTATATAATTATTGAAGCTAGAGTACAACAAGTATCGCCAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01344	Kelch_1	Kelch motif	Repeat	Interproscan
PF13418	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan
PF13415	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006652	Repeat	Kelch repeat type 1	Interproscan
IPR015915	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR051568	Family	LZTR1/Attractin	Interproscan
IPR011043	Homologous_superfamily	Galactose oxidase/kelch, beta-propeller	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46376	LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005794	Cellular Component	Golgi apparatus	Interproscan