Detailed information of FUN_031512-T1 in Siderastrea siderea

Genomic Location: contig_33:511396...532266
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00250
all species →
ForkheadForkhead domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR047119
all species →
FamilyForkhead box protein N2/3-likeInterproscan
IPR001766
all species →
DomainFork head domainInterproscan
IPR036388
all species →
Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR036390
all species →
Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR018122
all species →
Conserved_siteFork head domain conserved site1Interproscan
IPR030456
all species →
Conserved_siteFork head domain conserved site 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13962
all species →
FORKHEAD BOX PROTEIN N3-LIKE PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000987
all species →
Molecular Functioncis-regulatory region sequence-specific DNA bindingInterproscan
GO:0003700
all species →
Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0005634
all species →
Cellular ComponentnucleusInterproscan
GO:0006355
all species →
Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0043565
all species →
Molecular Functionsequence-specific DNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K09407FOXN; forkhead box protein N-Transcription factorsko03000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_031512-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
9TPM > 0
7Conditions
22.3Max TPM
1.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 1 0.40 7.90
holobiont · low.pH Control.temp 20 1 0.58 11.60
holobiont · control.pH_high.temp 20 1 1.11 22.25
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 4 6.85 7.18
unannotated 1 1 6.70 6.70
live coral tissue/skeleton 1 1 9.09 9.09

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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