Gene detail

Detailed information of FUN_031536-T1 in Siderastrea siderea

Genomic Location: contig_33:933385...955089
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_031536-T1

atggaaaacGATTTAAAGCGAGTTGCTCGTCTAGAATACCTGAAACTTAGACAGTTGAAGCAAACAGAGAAAAGTGACGCTGTAAAGAGTTGTTTCACAGCTAACCGGCAGAATTTGAAAGAACTGCTATGGAAAAGAAAGCAAATACAGGgtggtgaaaaacagcaagttGTTCCATTCATCTCTACAGCGGAACAGCTTCCTTCTACAAGAAAATGCTCTGTTTACAGTGGATTTGGACATGGTACTCAACACACGGTGTTAAGGACCTTGTATACTGTGCAGCCATTACCTCAGTTCTTTATGTGGTCTCCTCTACAACAAAACTACATGGTTGAAGATGAGACAGTCCTACATAACATTCCATACATGGGAGAAGAAGTTCTAGACCAGGATGGATCCTTCATTGAGGAACTCATTAAAAACTATGAGGGGAGAGTACACAACACACCAGACCATGTGTTTGATGAAGCAGCACTCACAGATGATCTACTTGTTCAGCTGGTCGAAGCCTTGAAGAAACACAGAGAGTCAGCCAATAAAAACAAGGAGAGTGAAACAGCCAAAGAAAAGGAGAAAGGAACTAGGGAAGTTACAGAAAATTCTTCGAAAGATGAAACAGAACCAACAGTGGCAACAGACAAACATGATGAGCTATTTGATGCCATTGCATCTCTGTTTCCTGATAAAGGCTTACTGGGTGCTGAAGTTTATAGGAGGTACAAGAATGTGCTGGATCTTAAAAATGGTGAATTACCACCAGAATGCACACCAAACATCGACAGTCCTAAGGCACAATCAGTTTCAAGGGAACAGAGTCTACACTCATTTCACATGCTGTTCTGTAGAAGGTGTTATAAGTATGACTGCTTCATGCATGGATGGCGAACACTCCCTACACAGATAAAACGAAAGAGTCCTGTTGATCTGCAAGAAACAAGCCCATGTGGCTCTGACTGCTACCTGCACGTAAAGAATTCACATGAGGGGGATGGAGAAGGCAAGCCTTCTGAAGCAGTCAGCACAAGAAGACGAAGCCGAGCCAGCAGCAGGGATGTAAAAACAGGAAAGGGAGGCACTAAGGGATTTCCCAGTCCAGACCATGTTGCAgCTGGAGGAAGTAGTCCAGAACATTCATTGGTGACTTCTGAGTGGACTGGAGCTGAGGCATCGCTCTTTCGTGTTTTGAGGCCAATCTATTGCAACAACTACTGTAGCATTGCTAACTTGATTCAGTCCAAGACTTGTAAAGAGGTGTATCTGAGGGCGTTGCAAGAGTCACATGAGCCACTACCAACTGCTGATGATCAAGATACACCaccaaggaaaaagaaaagaaagcacAGGATGTGGTCTCTACATTGTAGAAAGATTCAGCTGAAAAAAGATTCCACGTCTACCCATGTGTATAACTACATACCATGCGACCACCCTGGTCAACCTTGTGACCAATCATGCATCTGCGTCGCCACCCAGAACTTCTGTGAGAAGTTCTGTCAATGTAGCACGGATTGTCAAAATCGTTTTCCTGGATGTCGTTGTAAAGCGCAGTGTAACACTAAGCAGTGCCCATGCTTCCTAGCGGTCAGAGAGTGTGATCCAGACCTCTGTCAGACATGTGGTGCTGATAACTTTGATGGAAAAACTAGCATCTGTTGTAGGAATGTTGGCCTTCAGCGTGGTCAACGAAAGCATCTTCTACTCGCCCCTTCTGATGTAGCCGGCTGGGGAATTTATATCAAGGAGCCTTGTAAAAAGAATGAGTTCATCGGGGAATACTGTGGAGAGATTATCTCCCAGGACGAGGCTGACCGCAGAGGAAAAGTTTACGACAAATACATGTGCAGCTTTTTGTTTAACCTCAACAACGACTTTGTTGTGGACGCCACTcgtaaaggaaataaaataagatTCGCCAACCATTCTATCAGTCCAAACTGCTATGCAAAAGTGATGATGGTGAACGGAGATCACAGAATCGGCATTTTTGCCAAGCGGGATATAGAAGCTGGAGAGGAACTGTTCTTCGATTACAGGTATAGCGCCACAGACGCCCTCAAGTTTGTGGGGATTGAACGGGACGTTGACTTTGCTTTACGATAG

Transcript

FUN_031536-T1

ATTTCTGGAAATACCTCAACTCTGATCTGAAAAGGTGGGCAAAATCTAATCATTGATTGGGCAGTATATGTAGCTTACATGACGGCTTTATGTATGAGTACGTCATGTAAAACTAACGTGAACTTCCGAGGGCCGATGCGACATTTCCCGAAACTTGACGAAAATCTACCGACTTTATGTTCGTTCAGTATTGTTCTGAAAACGTGTTTCCCGCCGCCGCTCATAAACAGTGGAGGTGTTGAGTCAGTTTAGTCGAGTcattttaaaatggaaaacGATTTAAAGCGAGTTGCTCGTCTAGAATACCTGAAACTTAGACAGTTGAAGCAAACAGAGAAAAGTGACGCTGTAAAGAGTTGTTTCACAGCTAACCGGCAGAATTTGAAAGAACTGCTATGGAAAAGAAAGCAAATACAGGgtggtgaaaaacagcaagttGTTCCATTCATCTCTACAGCGGAACAGCTTCCTTCTACAAGAAAATGCTCTGTTTACAGTGGATTTGGACATGGTACTCAACACACGGTGTTAAGGACCTTGTATACTGTGCAGCCATTACCTCAGTTCTTTATGTGGTCTCCTCTACAACAAAACTACATGGTTGAAGATGAGACAGTCCTACATAACATTCCATACATGGGAGAAGAAGTTCTAGACCAGGATGGATCCTTCATTGAGGAACTCATTAAAAACTATGAGGGGAGAGTACACAACACACCAGACCATGTGTTTGATGAAGCAGCACTCACAGATGATCTACTTGTTCAGCTGGTCGAAGCCTTGAAGAAACACAGAGAGTCAGCCAATAAAAACAAGGAGAGTGAAACAGCCAAAGAAAAGGAGAAAGGAACTAGGGAAGTTACAGAAAATTCTTCGAAAGATGAAACAGAACCAACAGTGGCAACAGACAAACATGATGAGCTATTTGATGCCATTGCATCTCTGTTTCCTGATAAAGGCTTACTGGGTGCTGAAGTTTATAGGAGGTACAAGAATGTGCTGGATCTTAAAAATGGTGAATTACCACCAGAATGCACACCAAACATCGACAGTCCTAAGGCACAATCAGTTTCAAGGGAACAGAGTCTACACTCATTTCACATGCTGTTCTGTAGAAGGTGTTATAAGTATGACTGCTTCATGCATGGATGGCGAACACTCCCTACACAGATAAAACGAAAGAGTCCTGTTGATCTGCAAGAAACAAGCCCATGTGGCTCTGACTGCTACCTGCACGTAAAGAATTCACATGAGGGGGATGGAGAAGGCAAGCCTTCTGAAGCAGTCAGCACAAGAAGACGAAGCCGAGCCAGCAGCAGGGATGTAAAAACAGGAAAGGGAGGCACTAAGGGATTTCCCAGTCCAGACCATGTTGCAgCTGGAGGAAGTAGTCCAGAACATTCATTGGTGACTTCTGAGTGGACTGGAGCTGAGGCATCGCTCTTTCGTGTTTTGAGGCCAATCTATTGCAACAACTACTGTAGCATTGCTAACTTGATTCAGTCCAAGACTTGTAAAGAGGTGTATCTGAGGGCGTTGCAAGAGTCACATGAGCCACTACCAACTGCTGATGATCAAGATACACCaccaaggaaaaagaaaagaaagcacAGGATGTGGTCTCTACATTGTAGAAAGATTCAGCTGAAAAAAGATTCCACGTCTACCCATGTGTATAACTACATACCATGCGACCACCCTGGTCAACCTTGTGACCAATCATGCATCTGCGTCGCCACCCAGAACTTCTGTGAGAAGTTCTGTCAATGTAGCACGGATTGTCAAAATCGTTTTCCTGGATGTCGTTGTAAAGCGCAGTGTAACACTAAGCAGTGCCCATGCTTCCTAGCGGTCAGAGAGTGTGATCCAGACCTCTGTCAGACATGTGGTGCTGATAACTTTGATGGAAAAACTAGCATCTGTTGTAGGAATGTTGGCCTTCAGCGTGGTCAACGAAAGCATCTTCTACTCGCCCCTTCTGATGTAGCCGGCTGGGGAATTTATATCAAGGAGCCTTGTAAAAAGAATGAGTTCATCGGGGAATACTGTGGAGAGATTATCTCCCAGGACGAGGCTGACCGCAGAGGAAAAGTTTACGACAAATACATGTGCAGCTTTTTGTTTAACCTCAACAACGACTTTGTTGTGGACGCCACTcgtaaaggaaataaaataagatTCGCCAACCATTCTATCAGTCCAAACTGCTATGCAAAAGTGATGATGGTGAACGGAGATCACAGAATCGGCATTTTTGCCAAGCGGGATATAGAAGCTGGAGAGGAACTGTTCTTCGATTACAGGTATAGCGCCACAGACGCCCTCAAGTTTGTGGGGATTGAACGGGACGTTGACTTTGCTTTACGATAGAACTGAAAAAAGCCAGTGCATCACTTTTTGTAATCATCTCATAACTCGTGCGTTACAGACCACTGTTAACAAAAACGCTATTACAAGCGTATCTTTatctaattttttttctcgatGTGTTCTGTCTGTATCAACTCGAAAAATAAACGTAGTCATTTGTGC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21358 all species →	Ezh2_MCSS	Ezh2, MCSS domain	Domain	Interproscan
PF18264 all species →	preSET_CXC	CXC domain	Domain	Interproscan
PF18118 all species →	PRC2_HTH_1	Polycomb repressive complex 2 tri-helical domain	Domain	Interproscan
PF00856 all species →	SET	SET domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001214 all species →	Domain	SET domain	Interproscan
IPR033467 all species →	Domain	Tesmin/TSO1-like CXC domain	Interproscan
IPR048358 all species →	Domain	EZH1/2, MCSS domain	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR044439 all species →	Domain	EZH2, SET domain	Interproscan
IPR045318 all species →	Family	Histone-lysine N-methyltransferase EZH1/2-like	Interproscan
IPR026489 all species →	Domain	CXC domain	Interproscan
IPR041355 all species →	Domain	Pre-SET CXC domain	Interproscan
IPR041343 all species →	Domain	Polycomb repressive complex 2 subunit EZH1/EZH2, tri-helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45747 all species →	HISTONE-LYSINE N-METHYLTRANSFERASE E(Z)	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0046976 all species →	Molecular Function	histone H3K27 methyltransferase activity	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0031507 all species →	Biological Process	heterochromatin formation	Interproscan
GO:0035098 all species →	Cellular Component	ESC/E(Z) complex	Interproscan
GO:0042054 all species →	Molecular Function	histone methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11430	EZH2; [histone H3]-lysine27 N-trimethyltransferase EZH2	EC:2.1.1.356	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_031536-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples

62TPM > 0

7Conditions

961.1Max TPM

260.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
holobiont · low.pH_high.temp	20	14	347.49	961.06
holobiont · low.pH Control.temp	20	12	199.12	865.23
holobiont · control.pH_high.temp	20	16	307.07	724.44
holobiont · control.pH Control.temp	19	14	261.97	708.14
Whole organism	4	4	15.89	21.24
unannotated	1	1	21.64	21.64
live coral tissue/skeleton	1	1	16.60	16.60

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR22214417	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	961.06
SRR22214405	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	831.48
SRR22214413	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	726.27
SRR22214408	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	685.69
SRR22214402	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	575.54
SRR22214412	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	461.80
SRR22214403	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	451.39
SRR22214419	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	422.76
SRR22214410	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	395.67
SRR22214404	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	394.49
SRR22214406	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	353.81
SRR22214420	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	350.73
SRR22214421	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	183.05
SRR22214407	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	156.05
SRR22214409	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214414	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214415	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214416	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214418	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214423	holobiont · low.pH_high.temp	holobiont	not recorded	low.pH_high.temp	SRP406607	0.00
SRR22214428	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	865.23
SRR22214436	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	425.76
SRR22214430	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	401.84
SRR22214429	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	381.52
SRR22214427	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	378.17
SRR22214424	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	290.76
SRR22214437	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	238.84
SRR22214445	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	238.00
SRR22214441	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	233.55
SRR22214425	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	187.34
SRR22214443	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	179.41
SRR22214442	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	161.91
SRR22214426	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214431	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214432	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214434	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214435	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214438	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214439	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214440	holobiont · low.pH Control.temp	holobiont	not recorded	low.pH Control.temp	SRP406607	0.00
SRR22214460	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	724.44
SRR22214453	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	662.55
SRR22214456	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	614.94
SRR22214461	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	551.26
SRR22214467	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	475.85
SRR22214447	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	427.89
SRR22214464	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	373.09
SRR22214452	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	334.97
SRR22214458	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	319.45
SRR22214459	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	316.63
SRR22214448	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	264.56
SRR22214463	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	257.69
SRR22214465	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	255.25
SRR22214446	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	246.48
SRR22214462	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	195.62
SRR22214449	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	120.67
SRR22214450	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214451	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214454	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214457	holobiont · control.pH_high.temp	holobiont	not recorded	control.pH_high.temp	SRP406607	0.00
SRR22214466	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	708.14
SRR22214411	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	649.48
SRR22214506	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	559.44
SRR22214400	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	526.42
SRR22214468	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	390.20
SRR22214471	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	347.35
SRR22214548	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	346.03
SRR22214469	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	329.68
SRR22214444	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	286.10
SRR22214422	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	275.45
SRR22214547	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	267.03
SRR22214481	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	173.05
SRR22214455	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	62.60
SRR22214492	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	56.40
SRR22214433	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214470	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214524	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214535	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR22214546	holobiont · control.pH Control.temp	holobiont	not recorded	control.pH Control.temp	SRP406607	0.00
SRR14295600	Whole organism	Whole organism	not recorded	not recorded	SRP315757	21.24
SRR14295604	Whole organism	Whole organism	not recorded	not recorded	SRP315757	15.43
SRR14295601	Whole organism	Whole organism	not recorded	not recorded	SRP315757	15.18
SRR14295603	Whole organism	Whole organism	not recorded	not recorded	SRP315757	11.71
ERR12861049	unannotated	not recorded	not recorded	not recorded	ERP159209	21.64
SRR12454619	live coral tissue/skeleton	live coral tissue/skeleton	not recorded	not recorded	SRP277390	16.60

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.