Gene detail

Detailed information of FUN_031628-T1 in Siderastrea siderea

Genomic Location: contig_33:2229830...2241785
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_031628-T1

ATGGACGCTGATTCTAGGTTCGCACGTGTAAATCAAGATCCTCGCTTCAAAAAAATCTCACGAAAGGAGAAGAAACTTAAGATTGATGGGCGATTTGAGAAAATGTTTACAGACAAAAGCTTCACAACAAAGTATTTTGTTGACAAACGTGGCTCACGAGTGGAGAAAACATCAACAGAAGATCTCCACAGATTTTATGAAATGTCAGATGAATCCGACAGAGATGAAGAAAAGGAATTAGAACTAGAAGAGAACCTGAAAACAGAAAAGGACTTGGGACagaaaaaagtggaaaaaagcaaATCCAGGaagaacaaaaaagataaaaaagagagcagaaaaaataaaaaggaactgCAGAAAATTGGGAGTATTGATTGTGACGAAGCTGATGAAAGTAGTTTTGACAAAGACCAGATAAAAAGCAAAGACAAGTTTGAAGATGATAATGAAGTCAGCTCAGAAGGAGATGCTGACATCAGCAGGGGAGAAGGTGACATATATTCTTCATCTGATGAAGAAGATGAGCAGAAAGTCCAACTTCAAATAGAACAGGAGGATGTTGAGCATCCTTGGGGAGAAATGGATGTTTCTGCCAAAACCACAGAAGAAGCTACAAGACGTCTTGCAATATGCAACCTGGACTGGGACAGAGTAACAGCAACTGATTTATTTGTGTTGTTCAATTCCTTCAAGCCCAGGGATGGTGTTATTCAGTCAGTCAAGATTTATCCTTCTAATTATGGCCTGGAACAAATGGGAAAAGAGGAAAGCCTAGGACCCGTTGAATTGAAAGATGATGAGGAAGACAAAGGAAATATGGAGGGCTCTGAGTTTTCTACAGAGAAATTGCGGCAATACCAGTTAAACAGATTGAAGTATTTTTATGCAGTTTTAGAGTGCAATTCACCAGAGACTGCAGAAGTGCTGTATGAAGAGTGCGATGGGACAGAATTTGAACTGAGTGGTAATGTGCTAGATTTAAGATTTATCCCAGATGACATGGAATTTGACCGTGAACCTCGCTCAGTCGCTACAGAGTTACCAACGTCAGGCTCGTACACTGCACCAGAGTTTTCTACAACAGCTCTTCACCAAACAAACGTCAAACTAACATGGGATGAAACGGACCCCGGACGGCAAAGAGCCATGATGAGAAAATTTAAGAAGGAGGATTTACTTGAGATGGATTTTAACGCATATCTGGCGTCTTCTTCTGACGAAGAGGAACCACAGGAGAGAGAAGAAATCGCAAATGAAGAACACGGCTCTTCTGAAGATGAGGACACGAAAATTGACAAGTACAAGCAACTTCTGAGGGAAATTGAAGACAAAGAGTGCAAAGCCGACAGAGAACAGGAATTAGAAATAACTTGGGAACCTGGCCTGCGAGGAGCTACAGAGGATCTGGTGACGAGCAAGATAAaggagaaagaaaggaagaaaatgaCGCCATGGGAAACATATCTAGAGAATAAAAAGGACAAGAGGAAAGAGAAGCGAATGGGAAAAGAAACTTCAAAGAAACATATATCAGGTAAAGATTCAGACAACAGTGACGAGATTCCGTCAGATGTTGATTTGTCAGATCCCTTTTTCAGTCAAGAAATTTCTGCTGGAGTAAATAACGCACATAAGGGTGACAAAACATCCAGTAAAGGAAGGAAAAAACGAAAACGAGCGGAGATGGAAACTGAAGAGGGTAAAAAGGCGAAGGAGGAACTAGAACTTCTGTTAATGGAAGATAAAGACGATCGGCAGCATTTCAGTCTGAAAGGAATAATGGAcagcgaaaaaaagaaaagcaagaaaaaacgcaaaaataaagcaaaagaagAGGAAATGGTGGATGATAATTTTAACGTGGACTTGAAAGATTCTCGATTTGACGCTTTGTTCACCTCTCATCACTTCGCTGTGGATCCCTCAGATCCGCAGTACAGGAAAACTAAAGCCATGGAAAGTATTATTGAGGAGAGacagaaaagaagagaaactcAAGAAAAAACTACCCAGGCTAGAGAGAAGGGAGAACAAAGTCAAAGAAGAGATCCCAGCTTATCTCTGCTGGTCAAGTCAGTTAAGTCCAAAACAGGACAATTCCATGAACAGAAGCAGAAGAGAAGGTTAAAGCATTCCTGA

Transcript

FUN_031628-T1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08159 all species →	NUC153	NUC153 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039754 all species →	Family	Pre-rRNA-processing protein Esf1	Interproscan
IPR012580 all species →	Domain	NUC153	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12202 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_031628-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.