Detailed information of FUN_031630-T2 in Siderastrea siderea

Genomic Location: contig_33:2276505...2332511
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04721
all species →		PAWPNGase C-terminal domain, mannose-binding module PAWDomainInterproscan
PF01841
all species →		Transglut_coreTransglutaminase-like superfamilyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002931
all species →		DomainTransglutaminase-likeInterproscan
IPR006588
all species →		DomainPeptide N glycanase, PAW domainInterproscan
IPR038680
all species →		Homologous_superfamilyPAW domain superfamilyInterproscan
IPR050883
all species →		FamilyPeptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidaseInterproscan
IPR038765
all species →		Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan
IPR008979
all species →		Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12143
all species →		PEPTIDE N-GLYCANASE PNGASE -RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006516
all species →		Biological Processglycoprotein catabolic processInterproscan
GO:0000224
all species →		Molecular Functionpeptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0006515
all species →		Biological Processprotein quality control for misfolded or incompletely synthesized proteinsInterproscan
GO:0006517
all species →		Biological Processprotein deglycosylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01456E3.5.1.52, NGLY1, PNG1; peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidaseEC:3.5.1.52
Protein processing in endoplasmic reticulumko04141deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_031630-T2 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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