Gene detail

Detailed information of FUN_031689-T1 in Siderastrea siderea

Genomic Location: contig_33:2967825...2988379
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_031689-T1

TTGTTCACTGCCATTTCAGTTTCTCTGCAAATAATTTCCTTGCAACACAGTACAGATCTTCAAAGCTTGGATGGATCGGTGCTGATCAGGCATTTCTAAGATTTCCCTCTGTAAAGAGGAGTTTGTCATAAACGAACAGTCTGTGGACATGGCTTCCGCGAAAGATGTTCGAGGTACAACTTATGTCAGTTTCGTGTGTCAAAGATGTTATCAACCTTTGAAGTTAGACCATTCTCTGTTGTCTCTGGACGGAGAAACGATTGCTGAGTTAACAGAACCCTTTCCAGAGTTCGCAGCTCAAACTGATGCGGGTGAAGATACGATTGGAAGGCATGAGTCATCTTTACAGCAGGATCCTGTTAATGCAGAAGAAGATGATACTGTTGTGAGGAGAATAATTCCTCCAGCCAGaTTGCAATCTCTAGAAGGTGGTTTTACTGTTATAGAAGACTCCCAGCCTGTCAACACAGAAAACCTCAGCCACAGACTTAAGGTCACCAGCTATCTGTTTGATGTTATGTCTGGACAGTCAGCTGTCGATCACCCACTGTGTGAAGAGTGTACCGACACCTTACTCGATCAGTTAGACCAGCAGCTTAAGATCACAGAAGACGAACTCAAAGACTACAAAGTGTTCTTCAACAAGCTGAACGACAAACCAACACTAGATACTGATGCTTTGTCTAAAGAACTTGCTGAACTTAGAAATGAGGAAGAAGAACTGATAAGGAAATTGGAGGAAGttgaaaaggaaagagaaaaGGTGGCTCAAAAAATGGAAATGGAAAAGGAGAGATCTAAACAACTAGAGATTGAAGAAAAGGAATACTGGATGGAGTATAGCAAATATCAGAAGGAGCTTCTGGAATACGAGGATGAACAACAAAGTGTTGACAATCAAATCAGATATGCTCAAGCTCAGCTGGACAAattgaaaaagacaaatgttTTTAACAGTACTTTTCATATATGGCATAAAGGTCATTTTGGAACAATAAATAACTTCAGACTTGGTCGTCTCCCTAGCGTGCCGGTCGAATGGAGTGAAATCAATGCAGCTTGGGGTCAAACGGTTCTATTGCTTCATTCTCTTGCTCGAAAGATGAATCTAACGTTTGAGAGGTACCGCTTGGTTCCTTACGGAAATCACTCTTATCTGGAATCGCTCACAGACAAGTCAAAGGATCTCCCTCTATACGGAACTGGCGGGTTCAGATTCTTTTGGGACACAAAATTTGACCACGCGATGGTTGGATTTTTGGATTGTTTACAACAGTTTAAAGAAGCTGTAGAGAAAGTGGATAAGAGATTTTGTCTTCCGTACAGGatggaaaaaggaaaaatttacGACTCGAGTGGAAGTGGTGGCGCATTTTCTATAAAaATTCAGTTCAACTCCGAGGAGCAGTGGACAAAGGCGTTGAAATTCGTGTTGACGAACTTAAAATGGGGACTGGCCTGGGTTTCGTCGCAGTTCACCGAGAAGTGATGCTAGCGCCTGGCACAGCGTTTTGTAATCAACGACAGCAAATGCTACAGTCTTCTAAGCACAAATAAATAGACCACTGACACCAGAAAGCAAAATTATCAAGAATTGTTTTTAGAGCGACGTTTATCCCTGGAAGAAAGCAAATTCTCTAGTTCATATTCAGAGTCAAGGGAACTGTATATCCTTAGGAGGCAATGTTGTGTTTGGTTATTGATGTGACGTGTCTGTCAATCAAGCGATGATGGAAGGGGTAAAGAGTCCAAGAAGTCCTTGGAGTGTCAATAAAAAATATCGGACAGAAGACACATCTGTTTCTGTACAAAAATAGTTGAAGAAAGAATTAAAAGATGTTGGGTTTATTATGTAGATTTATGATGTGCGAAGTTGTGAGACAAAAATACGTCTGTTGTTTAGACGGGGCGGTGAAGTTGTTTCCTAACTCCTCTAAGCAAACTACATGTAAGCCAAACTGACGTATCCCTACCCCCACTGGTGACGCAAGAACGCAACTTGGTGCTACTGGCATTTTCGCGCGTGAAGTCGTTAATTAAAACAGACGTTCCAACAGTCACATGTCGGCTGTAAGGTTAATCCCACGGCAACACAAAACGGCCGAAAAATGAGACTAGTTTGCGTCGACTTGCGTTGGAAGGTCAAAGAGTAGAAAACGTAGTTGCTAAATTGAACTCGATCAAAGTGGTCACGAGCAAGCAGCTGCGCGCAGTTCGTGGCCTAATCGAGTCGCAACTGAGGAAATGCAAATCATCAGTTCAGGCTTCCTCGCGGTCCAGCTCGGCTCGTGCTTTAAGGTAGAACGATCCCAAAAAAATTGTGACAAaatagtaagtaagtaagtaagtaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04111 all species →	APG6	Apg6 BARA domain	Domain	Interproscan
PF17675 all species →	APG6_N	Apg6 coiled-coil region	Coiled-coil	Interproscan
PF15285 all species →	BH3	Beclin-1 BH3 domain, Bcl-2-interacting	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038274 all species →	Homologous_superfamily	Atg6/Beclin C-terminal domain superfamily	Interproscan
IPR040455 all species →	Domain	Atg6, BARA domain	Interproscan
IPR041691 all species →	Domain	Atg6/beclin, coiled-coil domain	Interproscan
IPR007243 all species →	Family	Atg6/Beclin	Interproscan
IPR029318 all species →	Domain	Beclin-1, BH3 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12768 all species →	BECLIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000045 all species →	Biological Process	autophagosome assembly	Interproscan
GO:0000407 all species →	Cellular Component	phagophore assembly site	Interproscan
GO:0006914 all species →	Biological Process	autophagy	Interproscan
GO:0006995 all species →	Biological Process	cellular response to nitrogen starvation	Interproscan
GO:0034271 all species →	Cellular Component	phosphatidylinositol 3-kinase complex, class III, type I	Interproscan
GO:0034272 all species →	Cellular Component	phosphatidylinositol 3-kinase complex, class III, type II	Interproscan
GO:0045324 all species →	Biological Process	late endosome to vacuole transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08334	BECN, VPS30, ATG6; beclin	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.