Gene detail

Detailed information of FUN_031734-T1 in Acropora pulchra

Genomic Location: ptg000023l:24858438...24863761
NR annotation: XP_015766219.1, PREDICTED: uncharacterized protein LOC107345051 [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_031734-T1

ATGGCGGCAAGTGACGAATGGACCTCGTTCTCTCTAAATTCTTCGTGGTATCGAGAAAAACGGCGAGACGAATGGAGTCCAAAAAGCCAAGAGAGCGATCGTGGACCCTTCATCGATTCTGATGAGGAAAATAATCCTTCAGAAGGGATCGCCGTCAAAGATTCAATTCCAGAACGTCACGTTGAGCGCGAGTCTTTCGCTCCTCTAGTTCCTTGGTACGAAAATTCGTCCTTTTCGAGGAATTCACCTTCCTCAAGCTTGGATTGTCTTTCTGAGAAAAGTAAGGTCGTTAAAGAAGAAAGTACGATCATGCAAAAGCAGGTTGCAAAGTCATCGAACTCACTTGTGATAGGCAAACGCCCGCGTGCACAAGGGTTAAAGGATATCGACTTAAGCAGGAACCTCGCCGCTAAACATATTCGAGAGGCCAGAGAAGCAAATAAAAGCCCGAAGAAAAACAAGGTGGCCATCCCTTTATTGAGACATTCGTCCTGTCCGACTTTCAGTCACACCAATGAAAGTCACAGCAATGAAAGCTCTGTGGTACTGTCTGATAGACGTAACACCACAGGTAAAACTGGTGTAACCCGTAATTTGAGCTTTCAAGGCACGTCATCATCGTTTCCACAATCATTTAGAGCGTTGATACCATACGACAACAAAATTGTGAGACTTTTCAGCTGTTCGGATGAACAACTTCGTAACAGTAAGCTCTGCACTTCTGAAAAACTCAAGAATAATGATTTGTTGCCAAATGAATCTTCCGGTGGCAGACGAAATGCGGACTCTTCATCAAGAATTATTGAGGTTATCGATTTGACTTCATGTGAAGAAACACCTGATGACAAGCAAGAAGACCTCTGCAAGCAATCACAATCCCAATTAAGTGCTGCTAGCCTTCAGGGTAGCCACAGACTTCCAAGCATTGAACAATCAACCATGAGGAGAAGGGTCTCAAAGCTCACTTTCAGTGATGATGAAGACTGCGACTCAGAAGAGCAATACAAAGACAGAGAAAGTGTGAAGTCTAAACAAACTGCCAAGGCTGATAAAGGAGTTTCACCCAGAAAAAATGGAAAGTTTTTCTTGAAAATGGGCTGTATTTTCACACTTGGCACAATTTTGATGTGTTTGTACTTGCATGTTAACCCTCATGGGTTTTGTCTGGATAGTGAATTTGTCAAGAATATTTCAGGAATTGGTGATGCACTGAAGGAAAAGTTGTATGGTCAGCACATTGCACAGAAAATCATCACTGTGGCATTGCAAAATCACTTCAATAAGAACAATGCTCGCAAACCGCTTGTCTTGTCTTTTCATGGCTGGACAGGAACAGGGAAGAATTATGTCAGCAGCATTATCTCGGAGCATATCTTCAAGCACAAGATGCACAGTTCTTTTCTTCACAAGTTTATTGTACCTCTCCATTTTCCACACAAATCTGAAGTCAACACCTACAATGAGCACATAAAGCAATGGATCAGAGGAAACATATCACACTGCAGAAAAGGAGGACTGTTCATTTTTGATGAAATGGATAAAATTCACCTTGGAATGATGGGAACCATCAAAGATGCCATCTTGGATTTTCGTGGCAAGAGCCCATCAGCTGGTTATCAAAACATGGTGTTTATTTTTCTGTCAAACTCTGGAGGCCAGGCAATAAATGAACATGTCTTGAGGCATGTCTTTGACGGCAAATTGCGAGAAAGTTTGACATTAAGTGAACTGGAAAATCTCTTCTATAAAATGACAAAAGATACACCTGATATGTGGTTTTCAGATCTTGTGAAGGAAGATGTCATTGATCACGTAGTTCCATTTCTACCTTTGGAGAGGATGCACATCAAGCAGTGTATCCGAAAGGATCTCAGAAACAAAGGTTTCAATTTCAAAGAGACAATAGTGACAGATGTAGCAGATCAGATGGAGTATTTTCCACCAGGCCATGAGTTTTTTTCAGTCTCTGGTTATTTTAAAGTACCACAACACCCAAAACTAGGATCACACAAACAACCACAAAATCAAACCAACCACCGAAACTTAGCAGGGATCAATTCTATGCTTAAAATAAGCTGA

Transcript

FUN_031734-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9ER41	Torsin-1B OS=Mus musculus OX=10090 GN=Tor1b PE=1 SV=2
Q9ERA9	Torsin-1A (Fragment) OS=Cricetus cricetus OX=10034 GN=TOR1A PE=2 SV=1
Q60HG2	Torsin-1A OS=Macaca fascicularis OX=9541 GN=TOR1A PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001479 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21376 all species →	TOR1A_C	Torsin-1A, C-terminal domain	Domain	Interproscan
PF06309 all species →	Torsin	Torsin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049337 all species →	Domain	Torsin-1A, C-terminal domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR010448 all species →	Family	Torsin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10760 all species →	TORSIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22990	TOR1; torsin-1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.