Gene detail

Detailed information of FUN_031801-T1 in Acropora pulchra

Genomic Location: ptg000023l:25612098...25623788
NR annotation: XP_015747641.1, PREDICTED: breast cancer metastasis-suppressor 1-like protein-A [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4V8V1	Breast cancer metastasis-suppressor 1-like protein-A OS=Danio rerio OX=7955 GN=brms1la PE=2 SV=1
Q6AZT4	Breast cancer metastasis-suppressor 1-like protein OS=Xenopus laevis OX=8355 GN=brms1l PE=2 SV=1
A4II71	Breast cancer metastasis-suppressor 1-like protein OS=Xenopus tropicalis OX=8364 GN=brms1l PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003628 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08598 all species →	Sds3	Sds3-like	Family	Interproscan
PF02961 all species →	BAF	Barrier to autointegration factor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036617 all species →	Homologous_superfamily	Barrier-to-autointegration factor, BAF superfamily	Interproscan
IPR013907 all species →	Family	Sds3-like	Interproscan
IPR004122 all species →	Family	Barrier- to-autointegration factor, BAF	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21964 all species →	BREAST CANCER METASTASIS-SUPPRESSOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0042826 all species →	Molecular Function	histone deacetylase binding	Interproscan
GO:0070822 all species →	Cellular Component	Sin3-type complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19196	BRMS1; breast cancer metastasis-suppressor 1 and related proteins	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.