Gene detail

Detailed information of FUN_031835-T1 in Siderastrea siderea

Genomic Location: contig_33:5236437...5268665
NR annotation: no NCBI-NR hit recorded
Species abbreviation SSIDE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_031835-T1

ATGAGTAAATTATGCCAACAAGAGgccaatgtacatgtacagggaATTGTTGACCATTGGCTGGAGTTTAGTGCGAACTCTTTGGAGAATGCTAGTGAGGTCAACCATGCCCTCCATCGCTTGAACAAAAGCCTTGCACCGGTTGCTTTTCTTGTTGGACACTCTGTGTCGTTAGCTGACTTTGCAGTATGGGGAGCATTGAAAGTGAGTGGTAGGATTGACAGCCTTGTTAAGCCTGGAAGTTCTTTTGAACATGTTGCTCGCTGGTTGACATTCTGCAGAGCTCAACCACCTTTCTGCCATGGGTCTGAGAAGCTTCCAAGTCAAACCAATGATAAAAACTCTCAGCTGGGGaCAAAGATGAAGTCAGAGGGTAAATATGTCAATCTGCCGGGAGCATCCCATGGGAATATTGTGACCCGATTTCCACCTGAAGCCAGCGGTTACCTCCATATCGGCCATGCCAAGGCAGCTCTGTTGAATCAATACTACAGGAACATGTATGAAGGAAAAATGATCATGAGATTTGATGACACAAACCCTGCAAAGGAAAATGCTGAATTTGAAAAGGTTATCCTTGAGGATCTCAAAATGCTGAAAATTAAACCAGACCAGTTCTCGCATACATCAGACCACTTTGACACGATCATGGCTTTTGCTGAGAAGATGATCAGAGAAGGCAAAGCTTATGCCGATGACACTCCTGGGGACAAGATGAAAGAAGAGAGGGAGCAGCGCGTAAAATCTGCTAACCGTGACAACTCTGTGGAGGAAAACCTGCAAATCTGGGAAGAGATGAAGAAAGGAACAGAATATGGCCAGAGATTTGCTCTGAGAGCCAAGTTAGATTATCAGTCTGAGAATGGATGCCTGAGAGATCCTACGATATATCGGTGCAAACCAGAGGAGCATGTGCGAACTGGACTGAAATACAAGGTGTATCCCACATATGATTTTGCCTGTCCTATTGTGGACAGTGTCGAAGGAGTCACGCATGCATTGAGGACCACAGAGTATCATGACCGTGATCCTCAGTACTACTGGTTCATTGAGCAGCTGGGTATCAGAAAGCCATACATTTATGAATTCAGCCGGCTGACCCTTCAGAACACAGTGATGTCCAAGAGAAAACTGACCTATCTTGTAGACCAGGGTTATGTGGAGGGATGGGACGACCCTCGATTCCCAACGGTTCGTGGAGTTCTGAGGCGTGGCATGACTGTCGAAGGATTGAGAGAGTTTATTGTGTTACAGGGTTCATCAAAGGCAAACGTCCACATGGAATGGGACAAAATTTGGGCTATCAACAAGAAGGTCATTGATCCTGTAGCACCAAGATACACAGCTCTTCAAAAAGATGAGATGGTTCCCATCTTCATACCTGACGCTAAAGAAGAAATGAAAGAGTGTCCTTTGCACCCCAAGAACCCCAGTGTTGGTAACAAGGAAGTGTGGTACGCTCCTAAAGTGTACATTGAAGGTGCAGATGCCGTCACACTCTCTGAAGGTGAAATGGTCACGCTGATTAACTGGGGGAATGCCAAGATCACAAAGATCAACAGAACCCCTTCAGGAGGTGTGAAATCGTTGGAAGGTGAACTCCATCTGGATAACAAGGATTACAAGAAGACAACTAAGTTGACATGGATAGCAGAGACTCCCGAAGCACCGCTGCTCCCAACGATTGCAGTCCAgtttgatgacgtcatttccaaGCCGGTGCTCACTAAAACTGACGATTTCAAGAACTATATCAACCCGGATTCCAAGCATGAGACAGAAATGGCCGGAGATCCTGCCCTGGCATCACTGAAGAAGGGAGATATACTTCAACTTCAGCGGCGAGGATACTTCATCTGTGACCAGCCTTACGAGCCTCCGAGTCGTTATACTGGTCGTGAAAGCCCCGTGATTCTGTTTGCTGTCCCGGATGGCCACACCAAGCCTTCACCGACTGCAGGCTCCAAGGCTAAGGAATCAGGAGtccacaagaaaaacgagaataaaaagaaagagaaaggaaataaaaacaacagccAACCACCACCAGCCATGAATGGAACGGAAGTCATCAAACCTACTGCATCCCCGGAGCAAGTTGAGAAACTGAAAGGAGATATCACTGTACAAGGAGATAAAGTTCGAAACCTCAAAACTGGTGGAGCTGCTAAGGAAGAGATTGATGCAGCAGTGGCTGAACTCCTGAAACTGAAAGCAGAATATAAAAACCTCTCAGGAGAGGATCTTACTGGTGGTGGGGGAAAggggaaaaaagacaaaaagaaggAAGCTGGAAACAAAAATGACAAGCAAGACTCTAAACCTGTAAAAAAGCAGGAGAAAGTGGCACCAGTTGCTAAGGTGGAGAATGGAGAAGTGGACAgcacaggaaaaaaaatcacCAGGCTGGGCCTGGAGgctaaaaaagaagaaaatcttAGTGACTGGTTTTCACAGGTCATTACAAAGTCTGAAATGATTGAGTATTATGATGTTAGTGGATGTTATATTCTGAGACCATGGTCTTATGCTATATGGGAGCGTATAAAAGATTTCTTTGATGGAGAAATCAAGAAACTTGGAGTAGAGAATGTTTATTTTCCAATGTTTGTGTCCCAGTCAGctcttgaaaaagaaaagaccCATATTGCCGATTTTGCCCCAGAGGTTGCCTGGGTAACCAAATCAGGCCAGTCTGAATTAGCAGAACCCATTGCAATCAGACCGACAAGCGAGACTGTTATGTATCCAGCATATGCAAAGTGGATCAAGTCACACAGAGATCTCCCACTCAAACTGAATCAATGGAATAATGTTGTGAGATGGGAGTTTAAACATCCTCAACCTTTCCTAAGAACACGAGAGTTTCTCTGGCAAGAAGGACATTCTGCTTTTGCTACGTATGATGAAGCGGTTGAGGAAGTTTACACCATTTTAGATCTTTATCGGCAAGTTTACACAGATCTCCTTGCCATCCCAGTGATCAAAGGGAGAAAAACTGAGAAAGAGAAGTTTGCTGGCGGTGACTTTACCACTACAGTTGAAATATACATTTCAGCCAGTGGACGTGGAATTCAGGGTGCGACATCACACCATTTAGGACAGAATTTCTCCAAGATGTTCGACATTGTCTTTGAAGATCCTGACCCAACAAAACAGGAGAAAAGATATGTTTATCAGAATTCCTGGGGTCTTACAACTCGAACAGTTGGAGTCATGACTATGGTACATGGAGATAATCAAGGGTTGGTTCTGCCACCAAGGGTCGCTTCTATTCAGGCTGTGATCATACCTTGTGGCTTAACAGTGTCGTTACCGGAGGAAGAGAAGACCAAGCTGTTGGACAAGTGTAAAGAATTGGAGGAGAGACTAAGCGGATCTGGTATCAGAGCGAAAGGGGACTACAGAGATAACTACTCTCCTGGATGGAAATTCAACCACTGGGAATTAAAGGGTGTTCCTCTCCGTATTGAAGTTGGTCCCCGTGACGTCAAGGCAGAGCAGGTTGTCACTGTAAGAAGGGACACAGGAGAAAAGAATTCCATGAAGCAAGCTGGCATGGAAGAAAACATCAAAGAAACTCTGGAGCGTATTCATTATGATATGTACAACAAaGCCAAGAAGGAACTCCACGGCAACCTGGCTGTGGCACAAACGTGGTCCGAGTTCAATGCCTTGCTGGACAAGAACAAGATCATCCAGGCGCCGTTTTGCGGTGACGGAGATTGCGAGGGCAAGATCAAGAAAGATAGTGCAAGGGATCAAGACTTGGAGCCTGGAGCCCCATCAATGGGCGCCAAGAGTTTGTGTATCCCGTTTGACCAGCCCATGGAGATCGCCGCTGACACAAAATGCGTGCACCCGGAATGCGGCCAGCCTGCCAAGTTTTACACGCTGTTTGGCAGGAGTTATTAA

Transcript

FUN_031835-T1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03950 all species →	tRNA-synt_1c_C	tRNA synthetases class I (E and Q), anti-codon binding domain	Domain	Interproscan
PF00043 all species →	GST_C	Glutathione S-transferase, C-terminal domain	Domain	Interproscan
PF20974 all species →	tRNA-synt_1c_C2	tRNA synthetases class I (E and Q), anti-codon binding domain	Domain	Interproscan
PF00458 all species →	WHEP-TRS	WHEP-TRS domain	Domain	Interproscan
PF03129 all species →	HGTP_anticodon	Anticodon binding domain	Domain	Interproscan
PF09180 all species →	ProRS-C_1	Prolyl-tRNA synthetase, C-terminal	Domain	Interproscan
PF00749 all species →	tRNA-synt_1c	tRNA synthetases class I (E and Q), catalytic domain	Domain	Interproscan
PF00587 all species →	tRNA-synt_2b	tRNA synthetase class II core domain (G, H, P, S and T)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001412 all species →	Conserved_site	Aminoacyl-tRNA synthetase, class I, conserved site	Interproscan
IPR020059 all species →	Domain	Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain	Interproscan
IPR004046 all species →	Domain	Glutathione S-transferase, C-terminal	Interproscan
IPR010987 all species →	Domain	Glutathione S-transferase, C-terminal-like	Interproscan
IPR004499 all species →	Family	Proline-tRNA ligase, class IIa, archaeal-type	Interproscan
IPR000738 all species →	Domain	WHEP-TRS domain	Interproscan
IPR049437 all species →	Domain	tRNA synthetases class I (E and Q), anti-codon binding domain	Interproscan
IPR017449 all species →	Homologous_superfamily	Prolyl-tRNA synthetase, class II	Interproscan
IPR016061 all species →	Domain	Proline-tRNA ligase, class II, C-terminal	Interproscan
IPR009068 all species →	Homologous_superfamily	uS15/NS1, RNA-binding domain superfamily	Interproscan
IPR036621 all species →	Homologous_superfamily	Anticodon-binding domain superfamily	Interproscan
IPR004526 all species →	Family	Glutamyl-tRNA synthetase, archaeal/eukaryotic cytosolic	Interproscan
IPR011035 all species →	Homologous_superfamily	Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamily	Interproscan
IPR020061 all species →	Homologous_superfamily	Glutamine-tRNA ligase, alpha-bundle domain superfamily	Interproscan
IPR045864 all species →	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan
IPR004154 all species →	Domain	Anticodon-binding	Interproscan
IPR000924 all species →	Family	Glutamyl/glutaminyl-tRNA synthetase	Interproscan
IPR020056 all species →	Homologous_superfamily	Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminal	Interproscan
IPR006195 all species →	Domain	Aminoacyl-tRNA synthetase, class II	Interproscan
IPR036282 all species →	Homologous_superfamily	Glutathione S-transferase, C-terminal domain superfamily	Interproscan
IPR033721 all species →	Domain	Prolyl-tRNA synthetase, catalytic domain	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR020058 all species →	Domain	Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain	Interproscan
IPR002314 all species →	Domain	Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43382 all species →	PROLYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0004827 all species →	Molecular Function	proline-tRNA ligase activity	Interproscan
GO:0006433 all species →	Biological Process	prolyl-tRNA aminoacylation	Interproscan
GO:0017101 all species →	Cellular Component	aminoacyl-tRNA synthetase multienzyme complex	Interproscan
GO:0004818 all species →	Molecular Function	glutamate-tRNA ligase activity	Interproscan
GO:0006424 all species →	Biological Process	glutamyl-tRNA aminoacylation	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0043039 all species →	Biological Process	tRNA aminoacylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14163	EPRS; bifunctional glutamyl/prolyl-tRNA synthetase	EC:6.1.1.17 EC:6.1.1.15	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.