Detailed information of FUN_031854-T3 in Siderastrea siderea

Genomic Location: contig_33:5555527...5572351
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003766 (this species only) · gene tree & orthology
Ubiquitin familyUBD|Other|SH3 · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12796
all species →		Ank_2Ankyrin repeats (3 copies)RepeatInterproscan
PF21712
all species →		ASPP1-2_RAApoptosis-stimulating of p53 protein 1/2, RA domainDomainInterproscan
PF00018
all species →		SH3_1SH3 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000159
all species →		DomainRas-associating domainInterproscan
IPR036028
all species →		Homologous_superfamilySH3-like domain superfamilyInterproscan
IPR036770
all species →		Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR002110
all species →		RepeatAnkyrin repeatInterproscan
IPR047163
all species →		FamilyApoptosis-stimulating of p53 protein 1/2Interproscan
IPR048945
all species →		DomainRas association domain-containing protein 8/10, RA domainInterproscan
IPR001452
all species →		DomainSH3 domainInterproscan
IPR029071
all species →		Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24131
all species →		APOPTOSIS-STIMULATING OF P53 PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0007165
all species →		Biological Processsignal transductionInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0002039
all species →		Molecular Functionp53 bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0042981
all species →		Biological Processregulation of apoptotic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_031854-T3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_031854-T3 across 85 RNA-seq samples of Siderastrea siderea. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
0TPM > 0
7Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 0 0.00 0.00
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 0 0.00 0.00
holobiont · control.pH Control.temp 19 0 0.00 0.00
Whole organism 4 0 0.00 0.00
unannotated 1 0 0.00 0.00
live coral tissue/skeleton 1 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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