Detailed information of FUN_031859-T1 in Siderastrea siderea

Genomic Location: contig_33:5717757...5734082
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001527 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00225
all species →
KinesinKinesin motor domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001752
all species →
DomainKinesin motor domainInterproscan
IPR027640
all species →
FamilyKinesin-like proteinInterproscan
IPR036961
all species →
Homologous_superfamilyKinesin motor domain superfamilyInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21608
all species →
UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003777
all species →
Molecular Functionmicrotubule motor activityInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0007018
all species →
Biological Processmicrotubule-based movementInterproscan
GO:0008017
all species →
Molecular Functionmicrotubule bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10404KIF26; kinesin family member 26-Cytoskeleton proteinsko04812deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_031859-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
13TPM > 0
7Conditions
28.0Max TPM
1.9Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 3 0.92 8.12
holobiont · low.pH Control.temp 20 0 0.00 0.00
holobiont · control.pH_high.temp 20 2 1.80 27.97
holobiont · control.pH Control.temp 19 2 1.28 18.74
Whole organism 4 4 16.07 23.57
unannotated 1 1 8.04 8.04
live coral tissue/skeleton 1 1 13.25 13.25

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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