Gene detail

Detailed information of FUN_031862-T2 in Siderastrea siderea

Genomic Location: contig_33:5763274...5797591
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_031862-T2

ACGTTTCCAACATGTCGGACGAGTGAATCGTAGTTTATCAAACTTGGAAAGAAAACCGTTTTTTGCCAATCTCTGTACGCAGTCAAAGGAAGCATGGCGTCTTCAGAACAGAGCGCTAATAAAGCTAGGATTCCTAAAGTCGCAAAGGTCAAGAATAAGGCCCCCGCACCCGTTCAGATCACAGCTGAACAGCTCTTAAGAGAAGCAAAGGAAAGGCAGTTGGAGTTGGTGCCTCCGCCTCCTAAACAGAAGATCAGTGATCCTGATGAGTTACAAGAATACAAGCTTCGCAAAAGAAAGGCTTTTGAGGATAGCCTCCGTAAAAACAGATCTGTGATCAGCAACTGGCTCAAGTATGCACAGTGGGAAGAAAGTCAAAGAGAAATTCAGAGAGCTCGGTCCATTTATGAGAGGGCTCTGGATGTAGACCACAGAAATATCACAATCTGGCTAAAATATGCAGAGATGGAAATGAAGCATCGACAGATTAACCATGCACGGAATATTTGGGACAGAGCAGTAACAATCCTACCCAGAGTGAACCAGTTTTGGTACAAATACACATACATGGAAGAGATGCTCTCCAATGTGGCAGGTGCAAGACAGATTTTTGAACGCTGGATGGAATGGGAACCTGATGAGCAGGCATGGCATTCTTACATTAACATGGAACTCAGATACAAGGAGACTGACCGTGCACGGAGTATATATGAGAGATTTGTGCTGGTGCATCCAGAGATCAAAAACTGGGTCAAATACGCCAAGTTTGAAGAGCGACAAGGAAATATGGTTGGTGCTAGAGATATCTATGAAAGGGCTGTGGAATTCTTTGGAGAGGAACATGCAGATGAGAAACTATTTCTTGCATTTGGAAAATTTGAGGAAAACTGTAAAGAGCATGATCGTGTGAGAGTGATTTTCCAGTATGCACTGAAAATACTGCCAAAGGAGGAGTGTCAGGAGCTGTACAAGGCTTATACTCAACATGAGAAAAAATATGGTGATAAAGGAGGGATTGAGGATGTGATTGTCAGCAAAAGAAAATTCCAGTATGAAGAGGAAGTAAAGACAAACCCAAACAATTACGATGCGTGGTTTGATTACCTGCGACTTATGGAAAGTGAAGCAGAACCTGATGCAGTGAGGGAAGTTTATGAGAGAGCTATAGCTAATGTCCCACCTGCTGAGGAGAAAAGGCTTTGGAGGCGATACATCTACTTGTGGATCAACTATGCACTGTATGAAGAACTAATTGCAAAGGACATGGAGCAAACAAGACAAGTGTACCGAGCTTGCCTGGATCTTATACCACACAAAAAGTTTACATTTGGTAAGGTTTGGCTGTTGTACGCCCAGTTTGAAATCCGTCAGAAAGATCTGAAGGCAGCTCGACAAGCATTGGGCACAGCAATAGGCAAGTGTCCCAAGGACAGGCTCTTCAGGGAATACATTGGTCTTGAATTACAGCTTCGTGAGTTTGACCGCTGTCGTAAGCTGTATGAGAAATTCCTGGAGTTCAACCCTGCCAATTGTACCACATGGGTGAAGTATGCTGAACTGGAGACCATTCTGGGTGATACTGACAGAGCCAGAGCACTGTTTGAACTGGCTGTCAATCAGCCACTGTTGGACATGCCAGAGGTTTTGTGGAAAGCCTACATAGATTTCGAAATAAACATGGAAGAATACGACCGGACGCGAGACTTGTACGAAAGACTTCTAACTCGAACACAGCATGTGAAGGTGTGGATGAGTTTTGCACAGTTCGAGTCCTCTACAGGAACTGATGAGAGTATGGAACAAGCAAGgaacgTTTATGAACGAGCAGATAAATCTCTCAGGAATTCAGAGGAAAAAGAGGAGAGAGTCATGCTTTTAGAATCCTGGAAGGAATTCGAGGTATTCATAAGCGCAGATTAGAAATAACGCAATCAGAAAATTCTGAGACCCCCGTCCACAATAATAAGTTTTCAAATTTGGCTGAAAACGTAGTAAAATATTTTCTCCATGCACACATTCAAGCGTTTTCGTGTCCTTTTCACTTATCCATACACCTCCCTTTTTGCACGTTTTGCCCGTAGATACGTGGTGTAACTgtcatatagtggtttgactcAGTCCAATATAGGGATAATATACGAAgcgatatacatagctatacacagctatacatggctatac

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02184 all species →	HAT	HAT (Half-A-TPR) repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR003107 all species →	Repeat	HAT (Half-A-TPR) repeat	Interproscan
IPR045075 all species →	Family	Pre-mRNA-splicing factor Syf1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11246 all species →	PRE-MRNA SPLICING FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0000245 all species →	Biological Process	spliceosomal complex assembly	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0000974 all species →	Cellular Component	Prp19 complex	Interproscan
GO:0071007 all species →	Cellular Component	U2-type catalytic step 2 spliceosome	Interproscan
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan
GO:0071014 all species →	Cellular Component	post-mRNA release spliceosomal complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12869	CRN, CRNKL1, CLF1, SYF3; crooked neck	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.