Gene detail

Detailed information of FUN_031880-T1 in Siderastrea siderea

Genomic Location: contig_33:6103240...6122684
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_031880-T1

ATGAATCCGTATGCGTATCAACAAGCacaattacaacaacaacagcagcagtaTCAGTATCAAGCCCAATATGCTCAACCACAGCAGTATTATTACGTTCAACCACAAGCGTCAACGCAACCAGCTTATCCAGCCACGCAGCCATATGTTGCCGCGCAGTACGGAACTGTTGCCTATCAAAATCCTCAAGCAGTCGCCGCTGTAGGGCAGTATCCCGTGCAAGGATATGCTCACGTCACCGGGACACAACAATATGGAGTTGCAGCTGGACAAAACTATTATGCCCCCACGGCCGCTCAGACGAGCCAGGGTCTTGAACAAGCCGTTCAACCACCACAGCCTCAGCAAAGTGTCGCGGAAGAACAGCCGCCACCGCTGCCTCCAGAGCAATCAGATTCCTCTGCCCCTCCTCCGCTGCCTCCTGAGCCAGCTCCCAGTTCAAACGCCTATGCTGCAACATCATCTTCAGCGATCGCTGATACCGCAGCAGGGGGGCAAAGCACAGCGGAACAACAAATCTTGGAAGCGCAGAGGCAGTATCAGGAGAAGTATGCTCAGTGGCAGCAGCAGTATGCCCAGTGGCAGGCTCAGCATCAGAACCATCCAGATCAGAAGCAGTATCAAGAGTGGCAGAAGCAGATGGATCAGTGGCAGCAGCAAAGTCAGAGTCTGATTCAGATGCAAGCTGGCGGAGTCCAACAACAAGCTGTGGGGACTGCTGCTACCACTCAGGGACAGGCTGgtacacaacaacaacagcatcaccaacaacaacaacaacatcaacaacaaccaGCTGTTCAATCACAGCAACAATTTCAGCATCAAGGTcaagaacaacaacagcaaaatatttaTCAACAACAGcaagtacaacaacaacaacaacaacaacaacaacagcaacaacaacaacaaccatatGAGCAACATCTttatcaacaacaacatcaacagaaACATGAGCAATCCTTTTATCAGCAACCTCAACatccacaacaacaacatcaacagaaACATGAGCAATCCTTTTATCAGCAACCTCAACatccacaacaacaacatcaacagaaACAGGAGCAATCCTTTTATCAGCAACCTCAACATCCACAGCAACAACATCAACAGAAACATGAGCAATCCTTTTATCAGCAACCTCAACATCCACAACAACAACCTCAAGCTCATCCACAGTGGAATCAAAACAATTCTGTGCAAAATCAACAAGGGGGAGATTATCAGTATGATAATCAcaaacaacagcagcagcaacagtGGCAATCACAACATGAACATCAGCAACAAAATAGGTGGATGACAAATCAGAACTCACAGAAAGGACATTATAACCACAACCAAAACCAACACGAACAACAAGCTGTATCCCAGGCTCCAAAATTGATGGAGTCTGGCAAAGCTACATCAGTATCAGGCCAGGGACCAAGGTGGATGCAGTCTGCTAACTTGCAGATAACAAGGAATCAACAAGAAAGGCCTGTGGTGTCTGCTAGTGATAGTAAACAGCTACCCAAGTGGTTACAACAAGGATCAAAAAGTCAACAGCAAACTGCAGAAAGAACACCAAAGCAACAACAAGAGCAAAGCGACATGCCAAGATGGCTGcaagaaaaacttgaaaaaactgaaCAAGATGTCAAGAGAGCTGCTGCAGAAAGAGCTCTTCAAGAAAAGGAGGCCCCAAAGAAACAACTTCCAAAATGGATGCAGAACAATCAGCCAAAAACTGAGCAAACAGAAGCTGTTCAAGAAAAACCACAAAATCCAGCACAGCAAAAGCCAATTCCAAAGTGGCTTCAAGATACACCATCGACAGTTAGAAATCAGTCAGAAGATCAGAAAAAGACAAGTCAAGTACCAAAATGGCTGCAACCCAAAACATCTGTTACTCCAGACAGTACAACCCAAACACCAACAGTTTCATCACCAGCTTTGAAAAGGCCCTCCAAGTGGGACAAAgaagaaagAAGTCTATCATCCACATCTGTCTCGATCAGTCCACAAAAACTAGACCCCTTGAAGGAAATCGAGTTGCTAAGGCAACAACAAGAACAGCTCCAAAAGCTTCAAGAGCTTGAGAATCGCCTAAAGCAGACACCAACTGCTTCAAATGCTGCCTCTACCTCATCTTTGAACTCTTCCACTAATACCAGCAAAGCAGATACTGCCACTTATAGTTCCTGGTCACAGAATGAATGCAGAAGCCAAGGTTCTTCTGAGAAACCCATCCAGAAGAAAAGTACCAAACCAGCTTGCAAGTTCTTCCCTAACTGTCGCTTTGGAAGAAGttgccactttcatcacccgcCCTGCAAATTTGGTTCAAGATGTACAAAACAGGATTGCATATATGATCACATCACAGATTCAGAAATGGAAGAATTTTCAGAAGAACCTCAATACTCAGAATTAGATGCATATGCAGAGGAGCCAGATTCTTACAGCAGCAGCTTGTCACAGTTCTCATCAAGAGGAGACCAGATTCCTGGTATAGGAGATAACGAAATGCCAGTGGTACCTGCCAAAACAGAAGATGACACTGTCACAGGTGGCAGTAGTTATCAGCCTGAAGACAGCATTTACCAGGATACCAATTATGAGGCTTCTCAAGAGGAGTACATGGAGATTGAAGGTGAACAGTACAAAGAAGGAGACACAGCAGAAGTCATCAAAGAAGCAGCTTCAGTCCCCATTGACAGCACCCAGGCTGCAGCCGAACAAGGCAGCAAGCCTGGTGAAGATTGGCAACAGGGTGACCATCAATGGGGTCATGGAGAAAACTGGGATCACTATCAGGAGGAGCAGAGCAGTGCTGCAGGGTCTTGGCAAAGAGAGAAACCTTCGCAGGAGTCTGATTGGCCACCAGCTAGGGAGAGGTTCTCAAGATGGGAGGGTGGGGAGCGACCTCCCACCGACGGAGGGAGGCCACCAGTGCCAAGAGAAGGTGAGAAAGAAGGACAATTGGACCAGAAAGATTGGAAGCCACCTCATGAAAGGCATGAATGGGACTCAAGACCTCCTTTCCCAAGAGATGAGAGGCAGTTTGATCCTGCAAGACATGAGAGAGACAGAAGGCCACCTTTTCCTGATGAACATGGCAGAAGACCACCTTTCCCTCCAGATGAACGAGGCAGGAGGCCTCCGTGGTGGGATGAACGTGATGGAAGACCTCCATACCCAAGTGATGAAAGGGACAGAAGACCTCCTTTCCCAAGAGATGAATGGGACAGACCTCCCTTTCCACAGGATGAAAGGGATAGACCTCCATTTCCACGGGATGAAAGGGGCAGACCTCCATTTCCAAGAGATGGTTGGGATAAAAGACCACCTTTTCCAAGGGGTAGAGATGAGAATCGACCACCATTCCAAGATGAGAGAGAAGCCGGGCCATCTGCATCAAAGGATGAAGGGGATCACAAGCTGCCTGAAGcagtgacccgagatcctttgtCTAAAAACGAACAGGCCCAACAGGAAGAACAAACTCAAAAAGAACCATCTGAGAAAACACCAGAGAAAGGCAAGCCACCATTTCCAAGAGATGACACAGACAGACCACCATTTATTAGAGATGACACAGACAGACCACCATTTCCAAGAGATGAGAAAGATAGGCCACCATTTCCAAGAGATGAGAAAGATAGGCCACCATTTCCAAGAGATGAGCGGGATCGGCCACCATTTCCAAGAGATGAGAGAGACAGGCCTCCATTTCCAAGAGATGAGAAAGATAGGCCACCATTTCCAAGAGGTGAACGAGATCGGCCACCATTTCCAAGAGATGAAAGAGACAGGCCTCCATTTCCAAGAGATGACTGGGATCGGCCACCATTTCCAAGAGATGAAAGGGACTGGCCACCATTCCCAAGGGATGAGCGTGATTCTCCATTTCCACCAAGAGGTGGTAGAGATCGTTGGCCACCTCCTCCAAGGGGTGAAAGAGAAAGATGGCCACCTTTTTCAAGAGGTGAAATGGATGAGCAGGCATGGGAACGACATCGTGGTCCACCTGGTAGACCTTTGTCTCCCAGGGAAAGAGGTGGAAGAGGAAGACCCCCATTTCATGAGGATGACAGGGGTAGACCCCTATCTCCACCTCCGTGGCCCCCAGGGGACCATCCACGACCCCTATCTCCACCCCCTTGGCCTCCCGTGGATCATCAGAGAAGAGCACGGTCTCCCCCTGGGTGTGACTTTAGAGGAAGGCCTCCACCCCCACCTGGAGAATTTGATCGATTTGGTCGTCCTCCACCTCGCGATATGGATTTCTCTGATGACCGAGGAAGACCACCTCCATGGGACTGGGATAGGGGAGACTGGAGAAGACCTCCTGGTGAAGAGAGATTAAGAGAACCTCGTCATCCAGATGATCGATGGGAAAGATCACCCCCACGCCACTGGGACTATCCAGAGCACTTGCCCTCTGACCACCCTAGAGAGTGGGAAAGAGATGGAAGAAGGGTTCCAGATGACAGGTGGTACGATGAGCGAGGTGCTCCAGATAGAAGACCCCCATATGATGATTACTACCGAGACAAACCTCCCTACCCCGAGGACCCTGCTGTACATGGCTCTGCTGGTTACCCACCCCACCCTGAAGAGGCTGGTCTCCCTAGTGAGCCACCAAGAATTGAGAAAAAGCCAGAGACTGTTCCTGTTGAGAGTATTTTGGACCCTCCAGGACGTGAATCTAGGCCTGACCGGATTGTGATCATTCTCCGAGGGCCTCCAGGGAGCGGTAAAACACACGTGGCCAGGCTGATTAAGGACAAGGAAGTGTCCCGTGGAGCACATGCACCAAGAATCTTGGCTTTGGATGACTACTTTTTAATGGAAGTGGAGAAAGTGGAAAAAGATCCAGACACTGGAAAGAAAGTCAAGAAGAAGGTAACAGAGTATGTCTACGAACAAGAGATGGAGGAGGCTTACAGAAGCAGTTTGTTCAAATCTTTCACTAAAACTCTTGAGGATGGCTTCTTTCCTGTTGTCATTGTGGATGCCATTCATGACAAGGTTgaacattttgaaaaatattggaGTCATGCAAAGCAGAAGGGTTTTGAGGTTTATGTTGCCGAGTTAATGGCCGACGCCCATGCGTGTGCGAAGAGGAACAGTCATAATCGCACCTTTGAAGAAATCAACAAGATGGTAGCCGAGTGGGAGGAGACACCTGCCCATCATCTGAGGCTTGATGTGCGATCTCTGCTGCAAGATGCTGTGATTACTGAGGTTGAGATGGAGGCAGCGGATGAAGCTGATGGAGCAAGTGCTGGGCAGGTGGAGGGACAAGGGCAGATGGAGGAAGAGGAGGATGAGGAGGTAGGAACAATAATTTTAAACTAA

Transcript

FUN_031880-T1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13671 all species →	AAA_33	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026314 all species →	Family	YLP motif-containing protein 1	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13413 all species →	YLP MOTIF CONTAINING PROTEIN NUCLEAR PROTEIN ZAP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0032204 all species →	Biological Process	regulation of telomere maintenance	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17602	YLPM1; YLP motif-containing protein 1	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.