Gene detail

Detailed information of FUN_031902-T1 in Acropora pulchra

Genomic Location: ptg000023l:26629316...26637806
NR annotation: XP_029189879.2, uncharacterized protein C19orf47 homolog isoform X1 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_031902-T1

CTTTTTGATCGATCGCATTGCAATGCACTGTTTTGATCGAAATATTATATTAAATATTTTTGTCTCTTCAAATAGGCCTTGAAAGCCTTCGATCGCTACATATCCTCGGAAAATGAGCGTGCAAGTTTCAAAGTGGACAAAGTTTTTCGTGAAAGCTGGTGTTCCAAGCGGACCTGCCAACAATTATGCAGTTATATTTTATGACAACAGGATCCAGGAAGACATGTTACCAGATCTATCAAAGGAGATTTTACGAGACATGGGGATTACAGTGATGGGTGATATAATTGCCATTTTGAGACACAGCAAGGAAGTCCATGCACAGAGTGTAAGAGAAAAGACAGCAATGGACATGGCAGTCACAGATGAGCCAGCACCATTTTCCTCTCCATCACCAAGCAGTCAAGCTGGTTCAAAACGCAAATCCTCAGCTGCAAGTCGCATGGTGGATCATTGGATAAACAGCCCGAAATCTGGTGAAAATTGTACAGGTAGCCCTGTGCAAGGTTCCACAGGCACACCAACTCCAACCAAGAAGAGACTTACCATTCAAGCTGATGTGTCAGATAAACCTCAGCCAATCAAGAGTCAGAAAACATTGTCAGAGAGGTTTAGTGTAAAGAGCTCCAAGGTTACACCCCGTAAACCAATGAAAGAGATGGCAAAGGTTGAAGAAGAACATACACTTAAAGTCAAAATGCCCCAGGGATCTACTGAAAGGACCAAGAAGCTGATTGCCAAGCAAAAACAAACCGCTGCTAGTGTCGCAGTTAACAAAGCCAAAATTGTGAAGAAACAGTCTGTATTCGATCGACTTGGCCAAGAAAGTCCGCCACCGCTTCCAGTGGCTGTCGAACCACCACCGAAGAAGGCTGAAGTGAAAGCACTAAAACCGTTGAAGACAAGTGTCACTGTCAAAATGAAGAAAAAAGCTCAAACTTCCGTTTTCAGTCGACTTGGAGGGATGGCCTCACCTCCAGCGCCGTCGCAAACAACAGTTCAAGCTGTAAATCCAAGACTTAGGCTTCCATCAAGCGAGGAAACACCTGCGACCATAGACTACACCAGCCACAGCGTGCTACAACCTGTTAAACGAAAAGGAGTACCTGCTAAACCAGTTAAACCTGTAAAACCCGTGAAGCGATCTCTGGGACCCACTTCGAGCGTGGACGAAAAATCCGTGTTCGCTCGTTTGGGTTCCAAAGCATAGTCGCTTTTTCTTCGAACAAATTTTTAAACCAATTTTTATCATTCTTACCGCCGCCAGATTTTGATTTTATATCGTTTATTTTGCAATGGCATGAAATATTCCTCGATGTCATCCTGTCGACATCTAAAGATTTTAAACCATTTTCAAGTTTTTCTCTTTTTTTCCCTTTTTCTGTCATCGCTCAGAACGGGTTGAATTTGCGGGGAAAATACGCCCGTGGGATAGTCTGGAATCTGTTTCTATTTGCTTTGAATTGAGTCATCGACTGACATTCGTGGGGCTGTTTCAAAATGAGCCAACGTAGTTTTGGTGAAGGCGGGGTGAGGTGCTTGCATGTTATTAGGCTCTTGTTTGCGCTGAGGTCGTTTTTCGTCAACAGGGAGCAGGCGTAACATCGCTTTTTAGAGTATTGTTATTTTTTCAACACATTTCAGAATGGATAAAAAGAAACAGAAAAAGACTCTTAAAGAGTACAAGTAGTATATTGTTTTTCTTATTGAATCAAACTATAGAGTGTTTTCACGTGACGTCACGGCGGCCATGTTGTTGTCCCTACACAAAGGAACGGCGGCCATGTTGGTGTCGCCAACTAATCCTTCGTGAATTGAACTCAAGTCTTATGCAAACGTTTTCTTTTGTTTTAGTTGAAAAACAACCATGCTCATTGATCACGTGAGTGAAAACACTCTATAAACCCGTTAGTCTCACTGATCTAAAAAGAAAAAGACCGAATCGAGCTTCTATTGTTTGAAAAAATGACACCAAAAAATTTCAGCGGCGGCCATCTCACTAGGACCCACAAAGCTGGTCCTAATGATGAGTCAATGCGAAATC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0JPQ7	Uncharacterized protein C19orf47 homolog OS=Rattus norvegicus OX=10116 PE=2 SV=1
Q8R3Y5	Uncharacterized protein C19orf47 homolog OS=Mus musculus OX=10090 PE=1 SV=2
Q8N9M1	Uncharacterized protein C19orf47 OS=Homo sapiens OX=9606 GN=C19orf47 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002309 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18017 all species →	SAM_4	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR039161 all species →	Family	Uncharacterized protein C19orf47-like	Interproscan
IPR040772 all species →	Domain	C19orf47, SAM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21359 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_031902-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.