Gene detail

Detailed information of FUN_032046-T1 in Acropora pulchra

Genomic Location: ptg000023l:28358554...28378082
NR annotation: XP_044178890.1, CCAAT/enhancer-binding protein zeta-like isoform X3 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_032046-T1

ATGAACGAAATATCGCTAGAAGATGTTGTTAGAGCTGGAGGTGACGAGGAGGATTTTAAAATGTTAGAGGATGCCGAAACCCCTGATAAATCAAGCACCAGTGATAAAGGAGATCTAGAAACATCTGAGGTGAAGTCATTTATTGAACAACTGGGTTTACAAAATATGGTTTTTGGAGATGATGATGAAGGAGGAGATGAGGAAGACACTGGCATGGAAGGTGGCACAAGTCCTTTGCCAGTTAATGGAGTGGGTAAGAAGAACAATAACTTAAAGAAAGAGAAAAGAGGCCAAAGAGAGAAAAAACACAAGTTTGAAGACATTAGAAATGAGGTCCCACGAGAGCAACTTCAGAGAAAGAAGCACAGTTTACCAAAGAAGGAAGTAGGAGCGCAACAGAAGTTGTTGATCATACCTGGGGGGCTGTGGTATGATCTGATTACAGATGAGGAAACTACCAGCAACTGTTCTCTTGATCAATCTGAAATTGACCACCTCTTTGAAGAAGCAGCAAGCCTTGTGAAAAATGAAGCTAAGATTTATGATAAAATGAAGGGGACAGAAAGTTCATCTGACTATCGATGGTTGAAGTCAGTTGTTAGTTCTGGAACACTAAAAGATAAAGTGGCAGCTATGACTATTCAAGTACAGGAGTCAGCTATTCATGGACTGAAAGCTTTGGACATGTTGATGGGGATGGCAAAGAAAAAGGGAAGAAGAGAATGTACCATGACTATTGACATGATGAAGGAGCTTTGGTTGACTTTGCTGTTGCCAGAAAACCGGAAACTGCGGAAATTTAACCAGCATCCTTTGTCGACTTTGCATGATTTTGTACACAAGAGTGGAAACAGGGATGAGCGAGATAAGAGACTTATTCTCTGGTATTTTGAAGACCATTTAAAGAAAACTTATAAGGAGTTTATCGGCATTATTGAGAATCTTCTTCGTGACACTTTGGAGACCCTTAGGAGAAGGATTTTAGGAATAGTATATGAATTATTAAGCGAGAAACCAGAGCAGGAGCAAGTTTTGTTGAGTTTGCTTGTAAACAAGATTGGCGATCCTGAAAGGAAAGTTGCATCCAGAGCTGTTTTTCTGTTAAAGAATTTAGTGTCCAAACATCCCAGAATGAAACTTGTGGTTACCAAGGAAGTCGAGAAGCTTCTTTACAGACCCAACGTCGCCATCAAGGCTCAATATTATGCTATCTGTTTTCTAAGTCAGTTGATTCTGAGTAAAAGTAATCCAGATCTTGCCACCAGGCTAATTTCGATTTATTTTTCATTCTTTGGGGCATTCTTAAAGAAAGGAGAATTGGAAGCTAAATTGCTTAGCGCTCTTCTCGTTGGTGTCAACAGAGCCTTTCCCTATGCCAAAGAGGACGACGAACAGTGTAGCAAACATGTCAATACTCTGTTTCGAACAGTGCATATTGGATCTTTTAACACAAGTGTCCAGGCGCTTATGTTGCTGTTTCAAGTCATGGATTCAAGGCAGTCCGTGTCAGATCGTTTTTACCAGGCTCTTTATGCCAAACTACTGGATCCGACTTTAACAGTTTCTTCGAAACAGGTTATGTTCATTAATGTTTTGTACAAGTCTTTAAAGGTGGATCCGTCGCAGAATCGTGTCAAGGCATTTGTCAAACGTATTTTACAAATCTGCAGCTTTCAACAACCGGCTTTTATCTGTGGGATACTCTTCTTGATTTCTGAATTGACAAAAGTGAAGCCAGCTTTTAGAAGTTTGACCTTACAACCCGAGGAAGAAGATGATGAGGAACATTTTGTAGACGCGCCGTCAGATGCGGAAGATACGTCTGACAAGAATAACAACACGAGCAAAACAGATCAACAAATCGGAAGCCATACTAATACAATACAGACCCGACAGAAAGAGACAGATTATTCTTATAAGCCTCACCTGAGAAATCCCCTTTACGTTGGCGCAGAACATTCCTGTGCATGGGAAATTAGCCAACTTTGCAGACATTATCATCCGTCAGTACGCGTCTTTGCTTCGACACTTGTAGAGCATATGATAGCAATGGTTAATGCCGAATTGCGGGATCAAATATTAGTTGTAATCCCTTTTGCATTGTTTGACAGGTTTTTCAAAAGAAAAGCTGAACAACAAAAGCAACAAATGAAGACTGGCAGCAAATTTGACGATGAAGATTATTTTGGTATGCTTGGTTGA

Transcript

FUN_032046-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P53569	CCAAT/enhancer-binding protein zeta OS=Mus musculus OX=10090 GN=Cebpz PE=1 SV=2
Q03701	CCAAT/enhancer-binding protein zeta OS=Homo sapiens OX=9606 GN=CEBPZ PE=1 SV=3
O36021	Uncharacterized protein C4F10.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC4F10.09c PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004145 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03914 all species →	CBF	CBF/Mak21 family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005612 all species →	Domain	CCAAT-binding factor	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR040155 all species →	Family	CEBPZ/Mak21-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12048 all species →	CCAAT-BINDING FACTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14832	MAK21, NOC1, CEBPZ; ribosome biogenesis protein MAK21	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.