Detailed information of FUN_032054-T1 in Siderastrea siderea

Genomic Location: contig_34:59090...67355
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01471
all species →		PG_binding_1Putative peptidoglycan binding domainDomainInterproscan
PF03734
all species →		YkuDL,D-transpeptidase catalytic domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR005490
all species →		DomainL,D-transpeptidase catalytic domainInterproscan
IPR002477
all species →		DomainPeptidoglycan binding-likeInterproscan
IPR036366
all species →		Homologous_superfamilyPGBD superfamilyInterproscan
IPR036365
all species →		Homologous_superfamilyPGBD-like superfamilyInterproscan

 PANTHER
No PANTHER signature was detected for FUN_032054-T1. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
GO termCategoryDescriptionSource
GO:0016740
all species →		Molecular Functiontransferase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_032054-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_032054-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
16TPM > 0
7Conditions
326.1Max TPM
21.7Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 1 7.86 157.23
holobiont · low.pH Control.temp 20 2 25.18 326.06
holobiont · control.pH_high.temp 20 1 5.45 109.09
holobiont · control.pH Control.temp 19 6 47.66 321.04
Whole organism 4 4 23.11 26.47
unannotated 1 1 38.36 38.36
live coral tissue/skeleton 1 1 40.68 40.68

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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