Gene detail

Detailed information of FUN_032069-T1 in Dendrogyra cylindrus

Genomic Location: contig_92:1151782...1160697
NR annotation: KAJ7365679.1, Paired box protein Pax-3 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_032069-T1

GGATGTCACGACAGTGGCGAACAGATACGGAAAGCCACGTCTCACcagttatttattcatttatttctcGCCTGTAGAAATGCTTTTTATCCTTGTGTCCGCTGTTGTGGAAAAAATCTTTATTTGAGTATTTCGTACTTGAGTGACGTTTACCAGGCGCAGGCAGAGTCAATGTATCGGCTGTAAAAGAAGAGAGCGTGATTTGAATATTGCTCGTGGATGGAGGATCTGTCTAAGTTTCCACATGCAGGACCAGGGCGTTTAAATCAACTTGGAGGTGCTTATATCAACGGCAAACCACTTCCAAAAGAAATTCGACAGGAAATCCTTGCTTTAGCTCTTCGAGGATTTCGTTCTTGTGATATCAGCCGCCGTTTACGAATCACTCATGGCTGCATTAGTAAGCTGTTGTCTAAGTATCGCAAAACTGGTTCAATCCAACCTGGTGGAGAAGGTGTAGGCCGACCCCGTGTGATCACTCCTCGCATAGCACAGAGAATCTTGGAGTACAGGAAAGAACAACCAAGACTGTTTTCTTGGGAGATACGAGATCGTCTTGTTCAAGAAAGCCTGTGCAGTAAAGAAAATCTTCCATCTCTTAGTTCCATCAGTCGATTGTTGAAGAATAAATTGGAAACAGCGTCCGGGATAATCCAAGAACGCAGCATTAATTCCTACATGATAGCAAGCATCTTAAACCTATCATGTAACGGGCAATCCTCCTCGTCGATTCTGTCATCGGTGCCTTCTTCTTCCTTAGTTGGCAATGGAAGAATAGCTGAACATGAACAGACAGCCATCATAGAGAATGTCCAGGATGCTGAAGACTCATGCGAGCCACTTCCGCTTCAAACTCAAAGAAGAGAACGCATCAAGTATACAAGCCACCAACTAAGTGAACTTGAAGCAGCATTTAAAATCAATCAATACCCATCTGCGTCATGGAGAGATCAGTTGGCAAGAGAAATTGGAGTTTCTGAGTCAAGAATTCAGGTGTGGTTCTCAAATCGAAGAGCGAAGTGCAAACCTACAAGGTGCACGACTGATGAAACAGTTCCAGGAACGAACGAACCAAAAAGGTGTACGTGTCGACGGAGTTCAGACCCTGACATACTGCCGAGGTTGATAGGGCCTGGTACTTCAAGAATATTCTTTCCACCCGGACAAGGTTGAAACTGTCATGATGATCACCATAAAAACATTTTACCACACAAGACTGCGTATAACATATTTACTGTAAGGAATGAGCTACTGTATTCGTTTTCGAGAAAAAAACTGTTAGAACTGAGACGAGTTTTTCTCGTTTATTTCTGAAAAGAAGTATCACGGGAATAGAAAATATCTTGACTAGGCTTCTCAGAATACGAAAACTGCGAGTGAGTTCGTGTACGTCCATTTCCTGGTTATGAGAGATCCCGAATAAAAACGGTGCCTTGCCTTAGTTTTTTTCCTCTGCATTTGAAAGATTCATTTATTTGCTAGTATTGGAAATGAGAACCAAGAACGTTTTTTTCTCTCCCTTCCCTCAAATCGAGCCTTAGGAAACCTTCTTTCCCTTTCTGCTTGGTCTGTTATGTAAAGACTATCAAAAGCTCCAAGCAAGTTAACGCGAAATTCTCTTAGTTCCTAAAACTCAAATTGGAGGCGTGAATCTTGTTTTAGAAAATAAAAGCACGCGACGAGTTTTATGTCCCCGTAATACTAATTTAATTTGCGAATTCGTCCAAACTTTTTCAGTTTCATTGCTAACTCTACCCTATGAATGAACTTATACACTTTTTTGAATGGCGTTCATTTAGAAATGAAGATATAGGTAATATACATTATTATCATATTACCactaattttcttttatttacatatttagtctaatttccagaggtggaTATAtgaagaatggaacattttgattggtcgaaaagcTCTAGTTTATATACctcttaatatatagatttaggcaggcctaaaaacgGAACTCCTATTTATTAGTTTTTTTTGCTCGAgcttgcactgtttcccaattaataagtagccacactatttctaagcgtatacggttgcccatataggtacatgtcgctgcactttattgggttcctcatgcacgtacgcacgtagacgcacacatcaaattttagtgttaagacttttcataactctaagggttattcaatgtaaaaagggccTTGGTGAAGggaataaatttgttttgatataCTTCAAAatagtcaaggcaaaaagatcaactcaaggcaaacagatcaactcaatgcactgaacaaagtgaactcgcggctattaaaacaaaatgaactcacgccacaacaaagaaaatcacagcgcca

Protein

Uniprot

Gene family

Uniprot term	Description
P06601	Segmentation protein paired OS=Drosophila melanogaster OX=7227 GN=prd PE=1 SV=1
P09082	Protein gooseberry OS=Drosophila melanogaster OX=7227 GN=gsb PE=2 SV=1
Q0IH87	Paired box protein Pax-3-B OS=Xenopus laevis OX=8355 GN=pax3-b PE=2 SV=2

Gene family	Subfamily
Transcription Factors Family	PAX

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00292	PAX	'Paired box' domain	Domain	Interproscan
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR001523	Domain	Paired domain	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR043565	Family	PAX family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45636	PAIRED BOX PROTEIN PAX-6-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan