Gene detail

Detailed information of FUN_032124-T1 in Acropora pulchra

Genomic Location: ptg000023l:29037320...29053280
NR annotation: XP_029201971.2, LOW QUALITY PROTEIN: uncharacterized protein LOC114966331 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_032124-T1

ATGGTTCCAGAAGTAAAACCTAAGGGGATTAAAGGAAGGCGAGGGTACGGACAAGCTTTACGTTTGAGGAGGAAGCGGTGGCTTCTGAATGGATTGAAAGCAGAACGGAGATATGTCGCTTCGTCCTTCAAACCATCATCTCAAACCGCACCCAGCATGCACTCCATCGATAGCAGCAAATCTGCTGACCGTGATTCATTTATGCTGCCGCAAGAGGATGGAATGACTGTAGTCGACTTTGAAGATCCTTGGGTAAGACGGGAAGATGTAGAATATCCAAGGTGTGACCAGAGATATCACAGATTTGAAGATGCTCAACGAAATTCCCTCACTCCCGACCAAGAACATTTGCTGTCCATCAAAGAACGATTCCCTGCCGCTCCTGGAGAGCACAGTCTCGAAGATGATAAGCCAGCGATTGAGTATAAAAGTTACAAACGTCGTTTCTACATCCTTTTGCTGTTTTCAGTCATTAGTTTCTGTCAGTATTGTGCTTGGAATACTTATGGACCCATCGCCACCACAGCTAAATGGGTGTTCGGTTGGTCTAATACGCAGATCGCGTTTCTCGCCAGTATGGATCCTATCACCTACTTGTGTACGATGCATTTCTTTTCTTGGATGATGGACGAGAAAGGTCTCCGATTGAGTGTTATAACCTCTTGCGTATTTATGTTCGTGGGAACAGGACTGCGATGTGCAACGTCAAACCCGTCATACGCTATTTGGTCAATGGGTGCTGGTCAGCTGTTTAATGGCATAGCGGGGCCAGTCACTCAAGCTGCTCCCACACTCCTTTCATCAACTTGGTTTCCATCTGAACAGCGGACGACCGCAACAGCAGTAGCAGCTCTCTGTGGTTCCCTTGGGGTTGCTGTTTCGTTTATGATTGGTCCTTTAGTTGTCACAGATGTCAAATCTGAATTGGATAGGATGATACCTGACAGGGGAAATATTACGAGAAATTTGAGTAACACCTTAGACGTATACTACGACAAAAATCTTCCATATTTAGACTCCATCTACAGAGATGCTAAGCACTATTGGCCGTTAGATCATCTAAATATTACTGTAAAAAATGCTGAAATCACCAGAAACGATATAAGAGCAAGGACTCACGTGTCGGGCGAATACTGGAGTATTCAAACCAATAAAGGAGTTAAAGACTCAAAGACAGGCTTGGAAGGACAGGTATTCAGTGATTGCGTGACGTCAAAAGGCGTTGTCAATCAAAGTGTCGAAACTGATGGCAAGGGAGCATGGTTAAATTTAGGAAGCTTTGTAAATACTTGTATGAGCGAACCCTCTCTATGTGCGTACGGATTAACTGTGTCACTCTGGACAAAGTATGCGGTTCTGGATAGCAATGGACTGCAGTACTTCATGGGCACAAGCGGCAGCAAAGAAGGACTTAGAGGATTTTTGATTTATCAAGATTTTTCATATGACAGAGAGGACCATTTGACCGTCAAAGTCGAAAATGGCACAATGGTATGGAAACGGAGCTTTGCGGTGCCGCGTGAATCTTGGACCCACGTGACTTTCACGTGGGACCAGCGTGATGGCCTTGCGATATATACAAACGGTTCTTTTGTGGGAGAGGACCCCAAGGGAAAAACTACGAAACCTGAAGCTCATAATTTTACTACGTTAACATTAGGTAGACCAAATAACGACAGGGTCTTCTCCAAGGCGTCGTTTGATGAGATAGCTATATGGGAGAAGAAACTTCATCCCACTGAAATTGAAGCTGTTTATAAAAGAACTTCAAAGGTTGGAATGGGACCAGACTTAGAAAAAGAAAAAGAACGACTGAGAAAAGAAGGGTCAAGGGATATTATGAATTTGCTTTATGTCGAATTTGGCGTTGTAACATTCCTGTTCGTGTTAGTCTTGATGTATTTCCCAGACAAACCTCCTTTACCACCAAGTAAATCCGCTAAAAGAAAGAGAGAGGACTTCTTTTCTGGGACCAAGCAGATATTCAGAAATAAACAATTCTGGACGCTCGCATTAGTGTATGGAGTTACAACTGGTGTTTACAGTGGCTGGGGAGCTTCATTAGCTGTTAATTTAGAGACATTCAGCATCACCCAGAATGAAGCCGGTCGCATAGGTTGCTTTGGTACGTTAGCTGGTATCGGTGCAGGTTTGTTACTGGCGAGGTGTGCTGACCTGTTCGGAGGCAAAATGAAGGCCCTCTTGCTTGTGCTGTTTTTCGGTTCGGCTGGATGTTTCTTGTGGTTTTCTCTTCTCTGTCTTGGAATGATTGGCTATTCCAGATATTCGCTGTACCAATCCAGTATATTGGGCGGGTTCTTTGTCAGTGGTACCATTCCGCTGTTCTATGAACTGACTGTAGAATCCACCTATCCAGTTGCCGAGGGAGTCACCACAGGGCTACTCACCTTAATTAACAATTCTTTCACTGTAATGTTCTTGCTCGTCTTAATGATACCAGGAGTCGGAACTGTATGGATGAACTGGTGTATGTTTGGCGCATGCGCTGGCTGTATTCCCGTGCTTCTGGGTTTTCGTGAGAGCTACAGAAGGCTCAACATAGACAACGGAGATTCCTCAGATGATATTCAGGAAATACAAGAAAAGGACATCACAAAAAGACTACAGGCCTCCATCGGTTCACTTTTTTCATTTACACAGGTTGACGGGTTGGTTGAAAAGCTCAGAAAAGCTAAAGAATCAGACATTTAA

Transcript

FUN_032124-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q66H95	Solute carrier family 49 member 4 OS=Rattus norvegicus OX=10116 GN=Slc49a4 PE=2 SV=1
Q96SL1	Solute carrier family 49 member 4 OS=Homo sapiens OX=9606 GN=SLC49A4 PE=1 SV=1
Q8BFQ6	Solute carrier family 49 member 4 OS=Mus musculus OX=10090 GN=Slc49a4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000479 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07690 all species →	MFS_1	Major Facilitator Superfamily	Family	Interproscan
PF13385 all species →	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049680 all species →	Family	Solute carrier family 49-like	Interproscan
IPR011701 all species →	Family	Major facilitator superfamily	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10924 all species →	MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0051184 all species →	Molecular Function	obsolete cofactor transmembrane transporter activity	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_032124-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.