Gene detail

Detailed information of FUN_032129-T1 in Acropora pulchra

Genomic Location: ptg000023l:29070316...29082366
NR annotation: XP_029201979.2, LOW QUALITY PROTEIN: kanadaptin-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_032129-T1

ATGGCAGACGCTGAGAATCCTTCGACAGAGAACAGCGAGAATAATGTTGATAATTCTTTTATGCTTCCACCTTCCCTTCCGATAAATCCCTCAGAGAAATCTAAGAAGAGGAGCACAGGAATCAAAGAAAAGCCTACAAGCTCGCAAAAAAAGGAAACGATTCCAGAATTACCTTATAAAGTTCCCTCTTGGAGTGGAATTCCGGACGATTTATATAGCTTGGAAGTGTTGAAGAATGGATGCATTATCTCAAACATTGACCTTACTTCTAAATCATTTTATGTATTTGGAAGACTTCCAAGCTGTGACATAAGTTTAGAACATCCGTCTGTGTCAAGATATCACGCAGTTATCCAGTATAAACAAAGTGACTCTTCGAACAGTGAAAGAGGGTTTTACATTTATGATCTTGGAAGCACACATGGAACTACAGTAAACAAGTCTCCTCTTGAGCCTAAACGTTATTATCGATTGCGTGTAGGATATGTTTTTAAGATCGGGGGAAGTTCAAGGTTATTTATTCTTCAGGGTCCAGAGGAGCCTCAAGAAGCTGAATCAGATCAATATACAAAAGATCAAACAACATCAAAGAGTGCTAAAGTAGGACAAGTAATGACAGAAGAGGAATATGAAGAGTGGAGGAAAGAAAGGGAAGGTGGAAAGCCAGATGAACAAGACGCTGGAATAGATTGGGGAATGGGAGAGGATGCTGTTGAAGAGCCTGCTTACCCAGCTGACTTTGGAGATGTTGAGAAAGAATCTGAACAACATCACTTTAAAGATCCTAAAAAGACGTTAAGAGGATTCTTTGAAAGAGAAGGGCTTGAACTAGAGTATGATGTGGAGGAGAAAGGACCTGGACATGCCAGAGTTTATCACTGCAAAGTCAAGCTGCCCATTGATGGTCCAAGTGGAGAACCTCTTTATGCAGAAGCAGCTGTTGCTGGAAGAAAGAAGGAAGCAGTTCTTGAATGTGCTCAGGAAGCTTGCAGAATGTTGGATGCAGCAGGTCTACTGAGACAATCATCACATGAAAGCAGAAAGCACAAAGAGAAAAACTGGGAAGAAAATGATTTTTATGACAGTGATGAAGACTCCTTTTTGGATAGAACTGGATCAGTTGAGAAGAAGAGAAATCAAAGAATGAAGCGCGCTGGTAAGGATAAGCCAACTACCGAAACGTATGAAACATTGACGTCTAAGTTGGAGGCATTAGAGAAAGAAATTCAAGGTTATGAAAGCAAATTACAGAAGGATGCAGTAGGCAACAAGGTTGGCAACTTGGAGGGTGTCGACTCCCTGGATCATTTCATGGTTTCCCTTGGAACATCCATTGATAAGCCAACAAAAACAAAGTTTAGAAGAGTGATAGTTGAGCTGAAGAAGGAAAGGGAAAGACTTCTTAAACTCTTGAACATTGCAAAACCAACTAACCTGCCACCATGTGCACAGTCTGTTTCAAGTGAATTAGCAGCCAAGAATGAAAAGGAAACCCACACAGATAGTGTAAGTGAAGGGAGCAATTTAACATCAATAACAACAGTGGACAAGAACACAGATTTGCGGCATCCTTCAGCGGCAGGTGATTTAGAAGCAACTGAAGAATCCAGGGAAGCAAGTCCTTCGGAAAGGAGAGAATTTGCTGTTCCTGCATTACCACCTCTTTCCACAAGAACAAATAAAAAAGAGGATAAAGCTCCTGAAACATTGGTAAAAGATAAAGAAAGAGCAGTCATTTGTGAGGACAAAACCCTCTTGCAAAAAGACAGTGAGAATCAGCAGGGAAGCAAACGACCAGGATCAGATGATGCTGAAAATGAACAGAATAAGACAGAAGAAAAGATCATGAGATCACCAAAGAAAAAGAAGCCCAAGCGGTCATTTCATGTACCATCTCAATGGGAAGCTGTTAGTGATCCAACATATGCAGCCTGGACACCACCAGAGGGGCAGACAGGTGATGGGAAAACACATCTAAATGAAAAGTTTGGCTACTAA

Transcript

FUN_032129-T1

AAAAAGCGCTCAGTCCAGTCTCTTCTGTTTTTAGCGTCGACTAGTCTACGGTACATTACATGCGAGTTATTTAAACAACAGGATCAAATTCTCAACATGGCAGACGCTGAGAATCCTTCGACAGAGAACAGCGAGAATAATGTTGATAATTCTTTTATGCTTCCACCTTCCCTTCCGATAAATCCCTCAGAGAAATCTAAGAAGAGGAGCACAGGAATCAAAGAAAAGCCTACAAGCTCGCAAAAAAAGGAAACGATTCCAGAATTACCTTATAAAGTTCCCTCTTGGAGTGGAATTCCGGACGATTTATATAGCTTGGAAGTGTTGAAGAATGGATGCATTATCTCAAACATTGACCTTACTTCTAAATCATTTTATGTATTTGGAAGACTTCCAAGCTGTGACATAAGTTTAGAACATCCGTCTGTGTCAAGATATCACGCAGTTATCCAGTATAAACAAAGTGACTCTTCGAACAGTGAAAGAGGGTTTTACATTTATGATCTTGGAAGCACACATGGAACTACAGTAAACAAGTCTCCTCTTGAGCCTAAACGTTATTATCGATTGCGTGTAGGATATGTTTTTAAGATCGGGGGAAGTTCAAGGTTATTTATTCTTCAGGGTCCAGAGGAGCCTCAAGAAGCTGAATCAGATCAATATACAAAAGATCAAACAACATCAAAGAGTGCTAAAGTAGGACAAGTAATGACAGAAGAGGAATATGAAGAGTGGAGGAAAGAAAGGGAAGGTGGAAAGCCAGATGAACAAGACGCTGGAATAGATTGGGGAATGGGAGAGGATGCTGTTGAAGAGCCTGCTTACCCAGCTGACTTTGGAGATGTTGAGAAAGAATCTGAACAACATCACTTTAAAGATCCTAAAAAGACGTTAAGAGGATTCTTTGAAAGAGAAGGGCTTGAACTAGAGTATGATGTGGAGGAGAAAGGACCTGGACATGCCAGAGTTTATCACTGCAAAGTCAAGCTGCCCATTGATGGTCCAAGTGGAGAACCTCTTTATGCAGAAGCAGCTGTTGCTGGAAGAAAGAAGGAAGCAGTTCTTGAATGTGCTCAGGAAGCTTGCAGAATGTTGGATGCAGCAGGTCTACTGAGACAATCATCACATGAAAGCAGAAAGCACAAAGAGAAAAACTGGGAAGAAAATGATTTTTATGACAGTGATGAAGACTCCTTTTTGGATAGAACTGGATCAGTTGAGAAGAAGAGAAATCAAAGAATGAAGCGCGCTGGTAAGGATAAGCCAACTACCGAAACGTATGAAACATTGACGTCTAAGTTGGAGGCATTAGAGAAAGAAATTCAAGGTTATGAAAGCAAATTACAGAAGGATGCAGTAGGCAACAAGGTTGGCAACTTGGAGGGTGTCGACTCCCTGGATCATTTCATGGTTTCCCTTGGAACATCCATTGATAAGCCAACAAAAACAAAGTTTAGAAGAGTGATAGTTGAGCTGAAGAAGGAAAGGGAAAGACTTCTTAAACTCTTGAACATTGCAAAACCAACTAACCTGCCACCATGTGCACAGTCTGTTTCAAGTGAATTAGCAGCCAAGAATGAAAAGGAAACCCACACAGATAGTGTAAGTGAAGGGAGCAATTTAACATCAATAACAACAGTGGACAAGAACACAGATTTGCGGCATCCTTCAGCGGCAGGTGATTTAGAAGCAACTGAAGAATCCAGGGAAGCAAGTCCTTCGGAAAGGAGAGAATTTGCTGTTCCTGCATTACCACCTCTTTCCACAAGAACAAATAAAAAAGAGGATAAAGCTCCTGAAACATTGGTAAAAGATAAAGAAAGAGCAGTCATTTGTGAGGACAAAACCCTCTTGCAAAAAGACAGTGAGAATCAGCAGGGAAGCAAACGACCAGGATCAGATGATGCTGAAAATGAACAGAATAAGACAGAAGAAAAGATCATGAGATCACCAAAGAAAAAGAAGCCCAAGCGGTCATTTCATGTACCATCTCAATGGGAAGCTGTTAGTGATCCAACATATGCAGCCTGGACACCACCAGAGGGGCAGACAGGTGATGGGAAAACACATCTAAATGAAAAGTTTGGCTACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BWU0	Kanadaptin OS=Homo sapiens OX=9606 GN=SLC4A1AP PE=1 SV=2
P34648	Uncharacterized protein ZK632.2 OS=Caenorhabditis elegans OX=6239 GN=ZK632.2 PE=4 SV=1
Q8W4D8	FHA domain-containing protein DDL OS=Arabidopsis thaliana OX=3702 GN=DDL PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005624 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00035 all species →	dsrm	Double-stranded RNA binding motif	Domain	Interproscan
PF00498 all species →	FHA	FHA domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050923 all species →	Family	Cellular Process Regulator and RNA Processing Protein	Interproscan
IPR000253 all species →	Domain	Forkhead-associated (FHA) domain	Interproscan
IPR014720 all species →	Domain	Double-stranded RNA-binding domain	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23308 all species →	NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_032129-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.