Gene detail

Detailed information of FUN_032136-T2 in Acropora pulchra

Genomic Location: ptg000023l:29139958...29147316
NR annotation: XP_029201922.2, protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1-like isoform X3 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_032136-T2

TATCTAGCTTGAAGAAGATCTGTTTCCAGGCCAAGGAAACGCTAGCGAAAAATGTGTGGATATTTCGAACAAGGTGGAGTTTGCAGTTTGCCCACGTCGAGTAGTTTTCTACTATTTGTATCGTTTCTCCGCTGACTTTCATGCAAGGATTTGTTCACGAAAGTGCTGTTCTCGCCACGAACAATATTCTATACACTCGGAGCGAGTTTTCAAGATGCCAAGTTGGATGAGAAAAGGAAGTAAAAAAAATCGGACAGTAATCATCGTGCTAATTCTTATCATGGGTGGCACATCGCTTTTCAACATATTATTCATGCTCCACACCGCTTCAGAGCTAACGGATAAGGACGCAGACACAGACCAATATGACCAGCACGCCGCTGAAGAACCACAGCATTTACTTGTTCCTTCTGCATTGTACTGGAAGAAGAGGGATGATTCCATAGTTTCGCCCGTTGAAAACCAGTTCTTGAAGATAGAAGTTTTATCAAGCAAGGACAATGTGACGGTGACTATTGATGGCAAACTGCATATGGATAGGTCTGAGATGTTAATAAGAGGGATGAATGTGGTAGTTTTAAATGAAGTAACTGGTGCTGTGATGTCATCAAGGTGGTATGATACGTATGAATCCCATCATGACAGCAGATTGCTTCTGGACCACTTGCAAGGTCTTAGACGTGGCCGCATTCTCTGCTTTGCCATTAAGGATGAAGCTTCGCTTCAACTTAATGACGATGTTCGTACATTCATCAAACGTCTCGGAAGTAATTATGTTAGTCAAATTAAATGGAGGTCCATGTGGGCTTTTGTTGTACAACGACTTGAAAGCCAATCAATTGTCTACGGAGAAAGCTTACAGCAAGCCGCTGGACATGACAGTTGGGGCTCACCAGTTCATCTGTATACCACGGTCAAGCTTCTCCCTGCGGTTCACGTCAAATGCAACTGGTACCAGTCACAAGAAAACACACGAAGGAGAGAATTTTGCGATAAATACGAGGGATATAGCAATGTTTGTAGCTGTGATAATCCGTTGTCTTTGGATTTCAATCCGCCTCCCTTTCAAGATGGTAGTAGGCTAAAGTTACCACTAGCAGTCATGGCAAGCAACAGACCAGTTTACTTACTGCGCATGCTTTTGAGTTTGCGCACTGTGGAAGGGCTCGATATTAGTTTGGTAACAGTGTTCATTGATGGTTTCTTTGATGAACCAGCGTCTGTCGCAAAACTGTTTGACTTGAACGTCGAGCATCATGCGGGTGTAGGAAAACTCAATACTAGGATATCTCAGGTAAAAAATGTTCATTCGTATTACCATAATCATATAATCAGCCTAATAGATCGACGTCACGCCGACCGTGGTGCCTTCAAGCACTTGGCTTGTTTGTATTTTTGCCCTGCGTCGAAAGTCGAACTGGCTCCAGAAACAGCTGTAAGTCGCAGGCAATTTCGCCTTTAAATTTGGAATTCCTAACTTCAGAAAAAGACGAGGCAAAGAAGTCGTTTTACGCATGCGCCGCGTTTCCTTGCCAGCTTTTCACTGAATTTTTTTTTTTGAGGATGTGATCGCCATAGCTGTTGCTTTCAGACGAACGTAAAAGGAAGAGCATCTGCGATTGTTTCGCTATGTAACTTATTTTAGAATCAAATAAATCTTGCATAAACTTGATCAGGAGACCATCAGATGGAGCCTCTACCTCCCTTAATTTCTTGAGTTAACCCTTTCCCGAGTAGATTTATAAATGGAACCATTTTCTTTCAGTTTGCATTGCACTTGAATCGAATGAATGCGCTTGCTGCCTGCTGTTTGACGTGAAGCAATACTTTTGTTATTTCTCTATTTTAATTGGTTCTTTACTCTGTCAGCGCGCGAAACCTCCTCAGAGACCCGTTCTTTTTATAAATGTACTCTGGAAAAGGTTGAGTCCCATGGCTTGTATGGGAGTTAGGGGCTCCATGTGATGGTGGGTTCCTGATTTGAAACATATGTAAATTTATATGTAAATCTTGGTTATAGTCTATCCTTGAGGTAAAGTGCTCGATGCGTTCGCAGAGCGTGGTATATCTGAAAATTGAGCTAATCAATCAGACGTAATTTTCTCTGTGACTGAGTTTCACGCTTACGCGTTCATCAGACAGACTTCCTCTGAGCGTGAAACTCAGTAACAGATAAAGTTGTCTCATTAATTTGTGCAATCTTCAGATATAAATGTATATATATATATATAAGGATTTCTAGAGTAAGAATCAAAGCCGAAACATTTCTTCTCAGTTACTTCGGGTTTCACTGATCGATACATATATATTTTTTGAAATACAGCATTACAAGAAGTCACTGGCTTGGTCGTTTGCGCAGCATCCAGATGCAAACTTCCTTATGATTTTCGAGGAAGACCTCTCTATGTCTGTGGATGTTTTGAGCTATTTTAAACAGCTGTTGCCAGTTTTCGAAAACGATAAAAGTGTTTATTGTATATCAGCTTGGAATGATCAGGTACTAACCATAAACAATTTTTTTTTAACACATGGACCGTGGGATTTGGGATATGTTACTTGAGATGGGCGGGTGCGAACAAACGGAAGCCTCAAACCACTCACCGGGAATTCCGTCCCCACATTCTATGAACCTTGCGTTGAACGTCGGTTGTTATTTTTAGTTTACGCAAGGACGACGACGATGAAGACGTGATAAAATGTACATTATTAACAGAAAAAATCATTTCTGGACACCCCACACGAGCGTTCATTTTAGCACATTTCCTTGTCGTACTTTGAGAAGAAATAGGGAGGTTAAACACGCTACCGGTTATTTCGTCCCATGGTCATTTCGTTCCGAGTATAAGTATTTTCGCTCCGAACCAGAAATTTGTTTAATAGAGTCATTCTTTTATGCAACTAAGGAGCGAATGAACTCTTTGTTCTTGGAACGAAATGATTGTAAACAGCAAGGACGGCTACGGCAGCGAAGTCGAAAATAAGCATTTGCGCAAATGTGGTTATTTTGCAATCATTTTTTTTTTCGCTTGTATTCTATATCGTCGACCAAGCACACCATAAGTAGGGAGCTTAAGCAACCACGTCGACTACGGCAACAAAACCCCACAAATTTGCATATTTGACAATGAAAAACAGTATTTTTACTTTGCACGTGCATTTTATTTTTTGACATTTTGTAGACGTTCTCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RCB9	Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Pongo abelii OX=9601 GN=POMGNT1 PE=2 SV=1
Q8WZA1	Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Homo sapiens OX=9606 GN=POMGNT1 PE=1 SV=2
Q5EAB6	Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Bos taurus OX=9913 GN=POMGNT1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000939 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15711 all species →	ILEI	Interleukin-like EMT inducer	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052463 all species →	Family	O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase	Interproscan
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR039477 all species →	Domain	ILEI/PANDER domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46396 all species →	PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016266 all species →	Biological Process	O-glycan processing	Interproscan
GO:0030173 all species →	Cellular Component	obsolete integral component of Golgi membrane	Interproscan
GO:0047223 all species →	Molecular Function	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_032136-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.