Detailed information of FUN_032333-T1 in Siderastrea siderea

Genomic Location: contig_34:3571206...3577157
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06140
all species →		Ifi-6-16Interferon-induced 6-16 family FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009311
all species →		FamilyInterferon alpha-inducible protein IFI6/IFI27-likeInterproscan
IPR038213
all species →		Homologous_superfamilyIFI6/IFI27-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16932
all species →		INTERFERON ALPHA-INDUCIBLE PROTEIN 27Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →		Cellular ComponentmembraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_032333-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_032333-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
84TPM > 0
7Conditions
1,671.2Max TPM
416.2Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 20 446.72 1,671.24
holobiont · low.pH Control.temp 20 20 573.23 1,088.80
holobiont · control.pH_high.temp 20 20 397.19 973.65
holobiont · control.pH Control.temp 19 18 361.97 1,067.40
Whole organism 4 4 30.09 33.42
unannotated 1 1 11.12 11.12
live coral tissue/skeleton 1 1 26.46 26.46

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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