Gene detail

Detailed information of FUN_032337-T1 in Dendrogyra cylindrus

Genomic Location: contig_94:1596612...1599461
NR annotation: CAH3019667.1, unnamed protein product, partial [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

FUN_032337-T1

atggcggctcgtgCGTCTGAAGGTAGAATGGACACAGCTGAAGCTATTGCCGAAATTTTTGCTGATCGCGACTCTGATGTAAGTAATTTAAGTCACAGCGAATTTGAGCCAAGTGATTCTGAGGAGTCTGaacaaaaagaagaagaagatATGTTGAAGGAAACCCTAAATTGTTTTGATGCCAATTCAAATTGTGAATGCAGTAAAACAGCAGACGTTTGCATATTTAACCTTGAGATTGACGAAATTCGAACCTTCACCAGCTATCAAGAATTGGCAGTGGATGAACCTACAGGGATTGTTGTGCGAGGAGTGCAGGGAGTGACCTATTATTTCAACGATTCCGGGGCAGCTTTGCCACTGCAACCTGATCGCGAATGTTCTACACTGGAAAGCACCATTTGCACTGATCCCCAGTTTGTAGATGGTAAGACGTACCGTTTGGCGATTGCCGTCAATGGGCAGATTCCTGGACCTACCTTGATAGTTCACGAAGAGCAAATTGTCGTTATTCACGTTCACAACAATCTTACCACTGAGGGTATTTCAATTCACTGGCATGGGATGCACCAAAGAGGAACACCTTTTTTTGACGGTGTGGGGCAAGTGACTCAATGTCAAATAGGGCCATCATCGACCTTTTCATATATGTACCGTGCCAGGCCTTCTGGTACTTTTTGGTATCATTCACACAGTGGTGCCCAGAGAACGGACGGCTTCTACGGTGCACTTATAGTTAAAGAAAGTCCTGGGAGAGTAGAAGCAATTAAATTAAGACTGCTGAGAGATTTTGAAGATTTTCCAGAGGACCACACCATATCGCTTCTAGACTGGCAAGAAGAAGCAGGCTTGGACCTGGCATCAAAGGTCACGGGTGGCGTGGGTTTCTATCCAGACACCTTACCTGGCGAGGTTCCTACTCCAGATGATGAAAAATATGTAAATACAGTAATTGCTGATAGAGCAGGGGCTGGGCCTATCCCGTATTTCTCTGGACTTATAAATGGCAAAGGCAGGCATGCCGATGTTCCTTACATCAAAACTAGACTGAGTATATTTACTGTTGAGGCAGGAAAGACATATCGCTTTCGTTTAATTGGAGCACAAGGACTATATGCTTACAAATTCTCCATTGATGGCCATAAACTGACTGTGGTGGGTACTGACGGCTATTGGATTCAGCCTGTAGAAGACGTTGATTACATCATCATTCATTCCGGAGAGAGATACGACTTTCTACTCAGTGCGAAAAATACTTTCGGACGGAAAGACTACTGGATGCAGGCGGAGACTCTAGAGATTGATAGAAGTGGCGCCGGACCACCTTACAGTTCCCTAGGACATGTGGCAGAGGCTATTTTGCACTACAAACAGGATAGTGACTCAGATGATCCGGATGTTAATgtaccgtcaacaaaatatgaaGAAATCAAATATAACTCTCCTCCCATATGGTGCACCACAAACAACTCATGCAAAGCAGTGAACTGCCCATTTTCGAACTTTCATCAATCATATAACATCGACTGTTCCAATGTTGACAGCCTACGTTTACTTGAGCCAACTCGACATGAAGAGCTTCCAGATGCAAATCCCGACGACGATTGCGAAAATTGCAAATTTTTTATCAATTTCAACTTTGAAGGTGACTCTGACACTAGTTCAGTGAATGGGCGCAATTTCATACTCCCCTCCTCCCCACCTCAAATGCAACCTGAAAAGTTTTACGCAGATGACACAATATGTAACCTTGCGACCAACTGCAATCCATTTACACCCGCGTGCTCATGTGCCCATGTTATAGACATTCCACAAGACAAAACTATTCAAATGGTGTTTTCAGCAATTGGTATCAGAGGCAATGCTCATCCAATTCATCTTCACGGCCAcacatttcatgttgttcatgTTGGATATCCGGAATATGACCAAACAACTGGTTTCATTACCAAGCACACCAGTGAAATAGACTGCGATGACAAAAGCTGTCAAAATGAGGGCTGCAACCAAGAAAGATGTACCAGACCAAGCATTTTCCATCGATCCGTTTACTATCAGAAAGGACACAGTCATGCTCCCTGCTGGGGGTTACGTTGTCATCAATTTCCACTCTGA

Transcript

FUN_032337-T1

Protein

Uniprot

Uniprot term	Description
P56193	Laccase-1 OS=Thanatephorus cucumeris OX=107832 GN=LCC1 PE=1 SV=1
Q0IP28	Laccase-25 OS=Oryza sativa subsp. japonica OX=39947 GN=LAC25 PE=3 SV=1
Q5N7A3	Laccase-6 OS=Oryza sativa subsp. japonica OX=39947 GN=LAC6 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07731	Cu-oxidase_2	Multicopper oxidase	Domain	Interproscan
PF00394	Cu-oxidase	Multicopper oxidase	Domain	Interproscan
PF07732	Cu-oxidase_3	Multicopper oxidase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045087	Family	Multicopper oxidase	Interproscan
IPR011706	Domain	Multicopper oxidase, C-terminal	Interproscan
IPR008972	Homologous_superfamily	Cupredoxin	Interproscan
IPR001117	Domain	Multicopper oxidase, second cupredoxin domain	Interproscan
IPR011707	Domain	Multicopper oxidase-like, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11709	MULTI-COPPER OXIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0005507	Molecular Function	copper ion binding	Interproscan