Detailed information of FUN_032351-T1 in Siderastrea siderea

Genomic Location: contig_34:3806363...3849668
NR annotation: no NCBI-NR hit recorded
Species Siderastrea siderea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05041
all species →
Pecanex_CPecanex protein (C-terminus)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007735
all species →
DomainPecanex, C-terminalInterproscan
IPR039797
all species →
FamilyProtein PecanexInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12372
all species →
PECANEXInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →
Cellular ComponentmembraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for FUN_032351-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of FUN_032351-T1 across 85 RNA-seq samples of Siderastrea siderea. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

85Samples
13TPM > 0
7Conditions
84.8Max TPM
3.9Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
holobiont · low.pH_high.temp 20 2 5.11 84.83
holobiont · low.pH Control.temp 20 1 1.03 20.56
holobiont · control.pH_high.temp 20 3 1.49 13.50
holobiont · control.pH Control.temp 19 1 0.60 11.41
Whole organism 4 4 27.82 28.97
unannotated 1 1 25.43 25.43
live coral tissue/skeleton 1 1 29.56 29.56

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (SSIDE_TPM, StringTie quantification over 85 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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