Gene detail

Detailed information of FUN_032387-T2 in Acropora pulchra

Genomic Location: ptg000023l:31405716...31410576
NR annotation: XP_029206268.2, uncharacterized protein LOC114970081 [Acropora millepora]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

FUN_032387-T2

CTCTCAGCATTTTAATTTTTGACACCTTGTTATATATAGTATCCTTTGTCAATTTCTCGCTGGGTCTGCACTTCATTGCACGACGGTAATTCCTCAGTTGCGCAAAAAACGAAGGAGCTGGGAAAATGAAGGCGAAGCGTTCCTCGTCACCGCATCAAATCCGGTCAATTTTTCTTTTCATGAAGCCTTCATACGTTTCTTGTGTACTCGTGTTTGTCTGCGCTTTTCTATGGGTAAAGAACGAAGCCGAGCATAAGCATCTTGTCGAGCTAGAAGATCAGTGGACGAAGTTGCAAGGGCGGTGTCGCCAAGAGATGTCATCGAAAGAACGCCAAGGAACACGTCCTAAACTTTCAGGTAACAGGTTTAAAATTTGCTTTTTCTCTTCTAACACGTGGATTTCTCCGGTGAAGCTTATGGTCAAAGGAAATACACCCGTTTTAATCGAAGTCAGAGCGCCCGGAAAATTGCATTTTTTTAGGGAGGTTATTACATATTCATATACATTAGACACTTACGCGATACGCGATTGGAGAGCAAGTCTTTGTAGGAAAGCGAAGTCAGGTAAACCATCACGACGGCGACTTCCAATCGAAATCAAACAATTTTTGCTACAACAGAAAAAAAGTTGCTGTAGGTTTCATTCGGCCCCTCAAACATTTTGTTAGCAATCGTTCTTGCGTCACGTTATAGTTTTGCCATTGTTCATACAAATCTTTCCGCCAACTATCCAGATAAAATGATTTTGGAAATGTTACGATTTTTTTCTTCGCGTGTAATTATTGTGCAGAGTCAAACACAAGGAGAACTCAAAGCTGTTATCGATCCGAGGCACTGCAGTCTGACCACGGCGGTAACTGCTAGTAATTAATTGCGTGAGCGCAACCATAGCACCTACGCATGGGCAAGTATAGGTAGTTAACCCTAATCTTAGGTCCAATACGAACTTTTTAGGAGCCCATTTACTGGAGAGCCAGCTCAAAAACTCCTTTCATTGAGGGAGAGCCCTATATGTTCTCCTTCAATGAATGCATGTCGTTGCAGTTGGTTGGAAACAAGGGCCCTGCTTTTTTGCAATAACTAAACGTTGTTATCAATACTTGACAATTATTCTTTGAAATCGAGGTAAATATTCTGTTACTATTCACCGAGATTGAAAACAATAATTGTTGTAGTATGTAAGCGTGAAGTGATCTCAACAACGCTCAATCTCAACATTCCTAGAAAAAAACCATTGACATCTCGAAACGCGAGTTTTGTTATTGTTTGGATCGCGCATTATTGACTCCTGAATTAGGGAGTGAATAATGCTAAATTATTCTGAGATAGCGAACCAGTCAGATTGATAGAAACACCAAGATCACTGAGTGAGTAAATACTAATTGATTTTATTATTGCTCTAGGTGGAAATTCATCGAAACACTTTTCAGCATTTTTCAATCAGCGAAAACGAAGGGATATCGTTGACAATGAAACAGGTTTTCCAGGTTTGAACTTCAACATGACCGTGATCTTCGAAAAATTGAAACCTGCCGATATTACACTCTGCAACTCAACTGGAGATGTCTGCCCAGCAGGGCGTCCAGGACCACCGGGTATCCCTGGGGTACGAGGGCAACCCGGTGACTCTGGAGCGAGAGGAGAGCAAGGATATACCGGTTTCGGTGGACGAACAGGAAGAGAGGGTATCCCTGGGATTCCTGGACTGAGGGGCCCAAAGGGATACCCTGGCGCCCAAGGACCTAGGGGACCGAGGGGGCCACCGGGTAGCTCCCAGGGAGAAGCGTGCCCTCCCCGTGCAATGGTCTCACCAACGGAACAGACTGGATACGACGGGGATGGCGCTGACATTATCTTCTACTGCACGGTGGCCAAGAACGTTACGGCAAAAATCGAATGGAGATTCAAAACTAAGAAGCTCTTGCCTGGAGGCAAGTACTTATTCAGAGATGATGGCGCGCTGATCATTAAGAATGTACAAAACAGCGACGAAGGAGAGTACATTTGTAGTGCTACAAACGCAGCTGGTACATCCGAGGCTTCTGGGTATTTGTTCGTACGAGTGACTTGTGAATGCTGGCGAAGTAGATCTAGAAAGACGTGGGGTGCTAACCGGTTGCGTTACAACAGGCCAGGAGATGGCATGGATAGCATCTACTTTCAAACGGATCGTGACGTCGTTCTACAAGGATATCGGCTGTGGGGAGTGTTTAGAAAAGAACAGCGTCTCCCAGTCACTATATATTTGTATAGGAATCTTACGTTGCTCGCAAAAAAGAGTGGAACATATTTAAGCAAGCCAGAAGACAAGTCGTTTGCAGTGTACTTTTCCAGGCGAATTCTCCTTCGAGCTGGTGTTAGATATACTGCTACGAGTAAAATAACTTTAGTGAGAAAAAGAGAGCTATATTTGCATTATTTTGACGATGGAATGGAAAATGTTTCGTGTTCCTCTGGGGTAAATGTTACCTTTGCTACGAAAGTAGATTGGAGGGGGCAGACAACCACAATAAGTAGCGGTCAATTGCCAGCCTTTATTTTCCGTACTTTGAAATGTTAAACAAGACAAGAAATAAAGCAACGATTTTTCATTTATTTTAATGACTTTACTGAAAGAATGATATTCAGAATTCACATGCAAATACCTTATGGCACTTTTGTTAAAGAAACTCAAAACATATCTTGAATAAAATCAGAATATTCACCATTACTCATCAGAAGCGATGCTGTATGTGAACTATACCTCCCCTCTCGGAGCTATATTGCATCTCCACGGTGTCTGGTTTCACATGTATGCGGACGAGACTCAGCTGTACCTTAGCATGAAGACCACTAAAGTCTTTGCGCACTAGGGTTGCTCAGTAGGTCGACTATCGGGCTGCCATGCGGGAGGCCGTAAGTTCAACTCCGGCCGGACTATCACTCAGGGTCTTAAAATAACTGAGGAGAGGCTGCTGCCACATTTGGTTAGACTTTCAAGTCTTCTCGGACTATAAACCATAGGCCCCGTCTCACAATACCTTCCATGTTTAAAAATATCCAATGTGGGACGATAAAGAACCCAAACACTATTCGAGAGGAGAAGGGCGTGAAGTTCCCGGTGTTGTGGCTGTCCTCTGTGCTGTACCCTCTCTCCAGCAAGATGGCCAGCTTGGTGCATGTCTCTAAAAGGCTAAGGATGTATGAAACACTAAAAACTAAAGGAAACACTAAAAACTAAAGCTAAGTTTGTTTGAATGAGCGGAAAAATTGGATGCTCTTGGACAGTTTCCGGTCAAGTAACGATAAGACAGAGCCCCTGGTTCTACGCGTTAAACATCGCCCTAAGCCACCATTAGATCCAATTACTGTGGGTGATGCCAGATCTCGCGCACGGAACACCGGCGCCGTCTTTGATACCATGAGTTTCGAGGAACATGTCATTGAACTATGCAGAACTGCTTTTTTTCACATCACAGACCAGGTGATCTGGTGACAAACATTAGTTGTACACGCTCATGAATCCCTTAGCATTGTCCCTACCAAAACACTTGTGCATACATTAGTAACGTCTCTGCTAGATTAATGTAATGTGCTCCTCTATGGCCTGATTATCTTATTCAAAGGCTACAATATGTTATGAACGCAACGGCCAAAGTTATCACTTGCAAGCGAAAGTTTGATCACGTCACACCACTGCTTATTAAGCTGTACTAGCTCCCCGTCCGTCAGCGTATTGTTTTTCAGATTTTATTGCACACTCCATGGCGTGACTCCAACGTTCCTGACTGAGCTCACCGGTCGTTATGTTCCTAGACGAACTCCTAGGTCTGCT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000831 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF08005 all species →	PHR	PHR domain	Domain	Interproscan
PF01391 all species →	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050632 all species →	Family	Nematode Cuticular Collagen	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR012983 all species →	Domain	PHR	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR008160 all species →	Repeat	Collagen triple helix repeat	Interproscan
IPR038648 all species →	Homologous_superfamily	PHR domain superfamily	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24637 all species →	COLLAGEN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for FUN_032387-T2. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_032387-T2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.