Gene detail

Detailed information of FUN_032572-T1 in Dendrogyra cylindrus

Genomic Location: contig_96:1120424...1133592
NR annotation: KAJ7383568.1, hypothetical protein OS493_027232 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

FUN_032572-T1

ATGCACATGCAATTACTAGCTTTGTTAGAAAGCTGCAGAAGCCAGCAGTTTACACCGAGACGGAAAAGACTAAAAGGCAACTTTGATAACCAAGTTTATTATCGAAGGATTACGTAATCAAAATGACAGACGAAGAAGATCAGACAAAATTCACTAAACTCTTCGTGGGAGGAATTCCTTATCGCTCAGCTGATGAAACACTGAAGGAGTACTTTGAACAGTTTGATGAGATCGTGGAAGCCGTTATCATCCGAGAACGGAACAGTCAGAGATCCAAGGGATATGGATTTGTTACCATGGCTACAAAGGAAGGAGCCGAAAGAGCCTGCGTGAACAAGAGACCAATCATTGATGGCAGACGGGCCAATGTCGACCTGGCCTACCTCGGTGCAAAGCCAAAAACCCAGAGTGATAATGCTGCCAGCCCAGAATGCTCCAGTCCTCCTGCTTCTCCATCAAGCAAACAGGCCAATGTCGACGTGGCCTTCCTCGAGACAAAGCGGAAAACCCAGACAGATGATGCTGCCAGCTCAGATTGCCCTTCGCCATCAAATTCTGAAGCAGACGTCGCAACAGATACCGGCACAACGGAATGGGCTTCTGAGGAGCACTGCCTGAATTATAGCAACACTCAAAGTGTTCATGGTAACTACATGAAAAACTCGGGTCATCCGTCCCCTGCTCCACCGATGGTGCTCCCTCCTGCCCAGCTGACCATGCTGAAGCCAACAAGTGTCAGCGGCATACAGACTGTCAGCTCGAATATGCCAGTGATGAACACAATGACCTACTACCAGGGAAATATCCCGCCGTATACGCCACCAGGCAACACGGCTCCTGTTGATCCAAACTTTGTGGATCAAACTGCAGTTAGCTTAGTCACTTTTGTGCCTCAAGGCCCTGTGGCTACTCCATTGCAGAACACAAGTCTCAATGTACAATGCCTTCCACAGTTTGGCCAAGTTCCTCCTCCGCCAGCAGCAACAGAGCTCATCCCCAGCCCTCAATACATCTACACTGTACCTGTGTGGTACGTTGAACAAGGAAGAGTATCCTGCGGTCAGGTCAGCTTGGAACCAGTGTCAAGATTTTCTCAAGCACCTTTGATTTCTACCGGGGTTAGTGGACACAACAATGGCGGCTTTCCTGCTTGCAAAATGTACCCCATACAGTCGTATTATTAACATGATGCCAGCTTACCTTTTTGGAACTGAACTTTTCCCCCAGTTTACACTCAAAGGAACAATAAGTTACCTACTTTTAAATGCATGCATAGAACTACTAAGATTTTCTGAAGACAGACACTGAATAGGCGTAATGGCGTAGTCGCGAACAACTTAACACCACTTGTAATCAACACAACGTGATAAAGATACGTTTTTCAACAGAAAGTGTCGCTATTTTGAGAAGTTTTCTCGTACCAGTACAACTGACAGCAtattaagaagtttccttgtaaACGATTAAATCAAGTCGACGACGCTTAccttccatagcatgaagtgtCTGGGAGTATGAAGCTCTGCTGCACCCCATGGGTGAGACGCTAATTCAGCCCAGGTTATCTAGAAGCAGCATGTTTTGGCAGGTTGACCAACACTTCACTGTTGCCTATGATGGAGTCCAGCCATAGAAAGGCACTGAGGAGCAATGTGTCTTGCCCAATACAAATTGCTTCGCGCATGATTATAAATTTTGTAACACATTAACAATTCATTTTAGTAGTCCTGGTagataaaaaaaagcttagcGTGCACCATATGAAAGTTAGGCTGGCCCAGCTCAAACCGTGCAAGCTTTCACCATAGTGTTTAAAACTAACGTAAATTTAGGTCATTGATGCGTTTCGTCATAAATGTTTATTATGTGCAGTACATTAATTAACAAAGGATAAATTGTCAAGATTTGATGCAAATccatactgaaaaaaaaaaattaaactacaaaACTTGTCATGTCATTGTTATAAAATGAACGTATCTTTCTTGATGTCGACTCATGAACCAGTTATCGCTTTGCAATGGCTCCAGGAAGTATCGTTAAGTTCTTTTTAAAAACATCGGCTCTGAATATTTTTATGATCATTCAGATGAATGCAAGATTcttttttatgttgtttttttcaGAAATTACTGTATATACGGGTAATTATAacgtaaattaaaataaatattcaGGCTAGTATTTTCATGAGGTTTAGTTCTATAGTTGCCCTAAGTTTTTAATATGGAATTAAGTAAATTCCATATACCACTATATCGAAGACAGCCGTTGTCATGCATGCACTTTATCATCTATTTTTATACACATTAGCAACATCACTTATTTGTATTTCACACGGATAGGAAAAAACCGAACTTGTCTGTAACACATCTCAGAAGAATAGGTATA

Protein

Uniprot

Uniprot term	Description
Q5ZJX4	RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1
Q9H0Z9	RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2
Q9BX46	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050886	Family	RNA-binding_regulatory_proteins	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48024	GEO13361P1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003730	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan