Gene detail

Detailed information of FUN_032630-T1 in Acropora pulchra

Genomic Location: ptg000023l:34071070...34094453
NR annotation: XP_015748719.1, PREDICTED: uncharacterized protein LOC107328511 isoform X1 [Acropora digitifera]
Species Acropora pulchra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

FUN_032630-T1

ATGGAAGCTGGATTAAGAGTTGTTCGGGGCCCCGACTGGATGTGGGGCAACCAAGATGGAGGTGAAGGAAACGTTGGAACAATCATTCATCTTGGACAAGATGGCGGAAGCTTGCCCGATGGAACTGTTTTGGTGTATTGGGATTCCGGAAAACAAATGAATTACCGAGTCGGACATTCTGGAAAGTTCGATCTTCGGATCTTGGACAGCGCCCCAACAGGAATTAAACATTGGGATATCATGTGTGATGGCTGTAGGGAAGATCCCATTGTTGGAACCAGATGGAAGTGTATTGATTGTCATGACTATGATTTATGTACGCAATGTTTTATGGCTGATGTTCATGATCGGAATCATTCGTTTTTGCGCATTGACAGTTCTCGTGGAGAAGGGGTGCCTGTTGGCAAGCGTGCAGACTGCACTATAAAGATCAAGTCAAAAGGAATTAAACATTGGGATATCATGTGTGATGGCTGTAGGGAAGATCCCATTGTTGGAACCAGATGGAAGTGTATTGATTGTCATAACTATGCATATGATTTATGTACGCAATGTTTTATGGCTGATGTTCATGATCGGAATCATTCGTTTTTGCGCATTGACAGTTCTCGTGGAGAAGGGGTGCCTGTTGGCAAGCGTGCAGACTACACTAAGATCAAGTCAAAAGGTTTCTTCCCTGGAGCCAAAGTGACACGTGGTAAAGACTGGCAGTGGGCCGACCAAGATGGGGGGGATGTTGGGACTCTTACAGCAATAATGTCATGGTATGAAACTCCAAGATCTGGGGCAAATGTCTCATGGAATATTCTAAGAGAGAACAATTACAGGACTGGCTATTTGGGCAAAGTGGACCTCAAATGCTCAACTGCAGCAGAGGGACCGACCTATTATCGTGAATGTTTGGCGAAAGCTGGAGAAATTCGTCAACGACCCAATCGACTGGAAGTCGGAGACCTCGTGTCAGTTTGCGTGGAGGCCGACGTGGTTCAAGCGATGGCTGAAGGGCACGGCGGCTGGCAAAGTAGTATGGCCGACTATATTGGAAAAGTTGGTAAAATCGAGAAGATTGATGCTGATGGCGATGTTCACGTAAGCTATGGCCCACAAAGTTCGGTTTTCCATTCCGATGCAGTGAAGAAGGTGTCAACTCTTACCTCTGGGAATAAAGTTCGTGTTTTGAGCGATAGGCAGCTCGTACAGATTCTACAGCAAGGTCGTGGACTATGGAACGACTCAATGGCTGGGGCCTTGGGAAAGGAAGGAGTAATCCTTGAAGTGGATTCCAACGGTGATGCTGTAGTGATGGTTGGCGCAAATCTGTGGTTGTTCAACCCGGAAGCTCTGGAAGATCTGAAGGACCAAGAAGCCTCCGTGAGGAGAAACGACACGCCAGCTGGCTCAACTGTTACTCCTCTTGAAATCAATCTACGTGGTCCTAGGGCATTGGAGGCTTACAACAAGGCTCTTACAGAAGGAAAAACTCGTCTAAAAAGGATTCCGATTATGTTGATTGGACAGGACCGTTCAGGAAAAACCAGCCTAAAGAAGTCACTGCAGGGATTACGATTCAACCCAGAAGAAAATGGCACTGAAGGGATAGATGTTGATCCATCATACTTCAAAGTAACCACCGAGATTTGGAAGGCAGGGAAGAGGGATGAAGCAGGAAATAAAGAAGAAATGGCTATTTCTTTTGAGAATCGTGTAGCTCGCGTAGTTGTTGAAAATCTAAGGGAACAAGAATTGACTTCTGAAGCGAAGATTGTTGACAAAGAGGAAGTTGTCAAAACTATCCCTGCGATCTTCACTGAGGCTCACAGTGTAAATGAAAGCAATGAGATCCTTGAAACAGCAGAAGGTTATGCAGATTCTTCGAACTTATCCGGTGTTGCACACGCCGATGGTGGCAGTGAAGTCTTTCAAGCCACAGATAATTATCAGACAGAGACGAAAGTTAGAGGTAACGTTTCCTCGGAAATGATACCGAAAGAGGTAGAAACGTTGATTAGGGAACTGGGAGATAGAGTTGACAAGATGGAAAGTGAGGATTACGTCTATTCAGTTTTGTGGGATTTCGCCGGAGAATCGGTTTATTATGAGACCCATCAACTCTTTCTGACATCAAGGGCAGTGTACCTTTTGGTTTATGACCTAAGCCGGGATCCTGACGAGATTGCACAGGCTGTGGAAAGGCAAGGAATCTTCAAGAAAATTAAAGAGAAGTCATGTGCGAAAACTAACCTTGACTGTCTAGACTACTGGATGACCTCAGTTTCGTCACAAGCCAGTCAAATTGAAGATTACGATTTGTACTCAGCTTCAACAGTTCTGCCAATGGCACTTCCTCCTGTCTTCTTGGTGTGTACGCATTCTGACAAACCTTTTGGTGGAAAAGACCCTTCCGAAGTGGCCATTAATTTGTACGGTTCCTTGGAAACAAAACCATATAGCACACAACTATACGATGGTGTGTTTGTAGTGGATAACACGAAATCAGGTATGCAAAAGGAGTGCTCAGAAGTGCAGCGTTTGAGAAAATGTATTTTAGATGTAATCGAAAAGCTACCACATAGGAATGAATATATCCCAATCAAGTGGTTGAGGTATGAAAAAGCCCTAAAGGTCTTACTGGATGAGGGCCATAAAAGGATCACTTTTGAGCATGCCAGACGGATCGCATACGAAGTCTGTCACATTCATGACTATCAAGAGTTTTTAACAGTTCTTGATTTCTTGCACGATCAGAGAATTATAATACATTTTGGTGACACTGATGAGCTAAACAAATTAGTTGTTTTGGATCCCCAGTGGTTGATCGATGTTTTCAAGAAGGTAATAACTGTTAAGCGTTTTGACCGTATAGAAAGAGGATTTAAGCATTTGTGGCTTAAGCTCGAAAGAGAAGGAATCCTGGAGGAAAAACTCCTCAAACATATGTGGGGTTCATTGGCCGAAGAACATCACACCTTTGAAAGCCTCATCGCAACCATGGAGAAGTTCAGCTTGTTATGCCCTTGGTCTTCATCTGATGAGCCATTTAGTAAGAAATATCTGGTGCCGTCCATGTTGAGATGGTATCCACCACAGGAGATCACCAAGTTGATTACCTCGGCAAGACTGCCCTCCCTTTTTGTCAAGTTTGAATCTGGTCATTCTCCATCCAATCTGTTTCCACGACTTGTGGTTCAATTCCTTCAGTGGGGTAGAAAGAAATTTTGCAGCATAGTGGATCCTCACTTGTATAAGAATTTCTTCAGATTTTACACTGAAGACAAAAACTGTTCAGTGGTACTCTTATGCCATTCCTCCATGATTGAAGTCGTTGTTCATGCAGGGAATGTTCTTTCGCTGAGGGACGACTCGCAGGCAAATTTAGGCAACTCGCCCGCAGATCAACGCGATTCATTTGAAGTTTTCTGCGCTCGTGAGGTCCTCAGACAGCTCGTGTTGTTGCTTGAGTGCTTGCGTAAAGAGTTTTGTTGGTTGAAGAGAATGAAATATCAAGCTGGGGTGATTTGTCCGGTTTGTTGCCAGGAAAGGATTGTCAAGTATTGCACTATTCATCACAAGCAAGATTGCGAGCAGGAAGAATGTCTTCATTTCATACCTGAATCTGAACTGCGTAATGCAAATCAGCCTATCACTTGCACCAGGTGGCCTGCTGCAGTAGATAAAGTTGACATCAACGATTTTTCAGCGTGGTTTCCCAGTTCACGTGAAGAGACAACAACCGACGTGATTAGTGGCAGACTCCTATGCAATCGAAGAGAGACAGAAGACAAGACACTTACTCTTCCTGGGAATGTTGCTAAATCACTAGTATCGCCATCATGTAATCCAAAAGAAATTGTACTTCAACTGAAACAAAACCTACATTTGGACCAAACGGATTTGAGGCAACCCAGCCCGGAAACAAAGAAAATGATCCGCTGTCTCGCGGCAACAGCTAAGGGTTCAAACAGGATTGATGTTGTTAAACACCTGCGAGAAATCACACCAGCAGGGACAACTGGTCCGTTGTTACCTGGTAAACTTGATATTTGTGATATCCCAGTTGAGAATTTGAGAGATCTTACAGTAGATTTGACCGTAAGAGGCCGGTGGAAAGTTGTCGCGGAGAGACTGGGCTTAAGAGGAAGTGAGATCGAGTTTCTTGATGAGAGATACCCAAATCCCAGTCAAGCTACATTGGAATTTGTGGCTCATCATTATGGTCTGAATGTGGATGATCTGTACGATTTGTTAACTGAGTGTGAGATGCCAGTGCTTGCTGATATGTTGTGA

Transcript

FUN_032630-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80SY4	E3 ubiquitin-protein ligase MIB1 OS=Mus musculus OX=10090 GN=Mib1 PE=1 SV=1
Q86YT6	E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens OX=9606 GN=MIB1 PE=1 SV=1
Q804S5	E3 ubiquitin-protein ligase mib1 OS=Danio rerio OX=7955 GN=mib1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000151 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00569 all species →	ZZ	Zinc finger, ZZ type	Domain	Interproscan
PF06701 all species →	MIB_HERC2	Mib_herc2	Domain	Interproscan
PF18346 all species →	SH3_15	Mind bomb SH3 repeat domain	Domain	Interproscan
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000433 all species →	Domain	Zinc finger, ZZ-type	Interproscan
IPR010606 all species →	Domain	Mib-herc2	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR040847 all species →	Domain	Mind bomb, SH3 repeat domain	Interproscan
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR037252 all species →	Homologous_superfamily	Mib/herc2 domain superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR043145 all species →	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24202 all species →	E3 UBIQUITIN-PROTEIN LIGASE MIB2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for FUN_032630-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.