Detailed information of FUN_032677-T1 in Acropora pulchra

Genomic Location: ptg000023l:34858132...34868179
NR annotation: XP_044171465.1, U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like [Acropora millepora]
Species abbreviation APULC · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9D361U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Mus musculus OX=10090 GN=Snrnp48 PE=2 SV=2
Q6IEG0U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP48 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006055 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05253
all species →		zf-U11-48KU11-48K-like CHHC zinc fingerDomainInterproscan
PF01480
all species →		PWIPWI domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR022776
all species →		DomainTRM13/UPF0224 family, U11-48K-like CHHC zinc finger domainInterproscan
IPR002483
all species →		DomainPWI domainInterproscan
IPR051591
all species →		FamilyUPF0224 (FAM112) RNA ProcessingInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21402
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
No Gene Ontology signature was detected for FUN_032677-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K13156SNRNP48; U11/U12 small nuclear ribonucleoprotein 48 kDa protein-Spliceosomeko03041deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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